CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13436_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 80.3 Contig13436_at Contig13436 - - 3e-1 At3g23200 unknown protein S.X. H.G.
0.67 84.7 Contig8059_at Contig8059 - - 8e-18 At1g08720 EDR1 (ENHANCED DISEASE RESISTANCE 1) S.X. H.G.
0.67 84.7 Contig8925_at Contig8925 - - 3e+0 At5g66060 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors S.X. H.G.
0.63 80.3 Contig24772_at Contig24772 - - 1e-4 At5g63740 zinc finger protein-related S.X. H.G.
0.53 69.7 Contig6491_at Contig6491 - - 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.52 68.3 Contig13168_at Contig13168 - - 3e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.40 53.1 Contig23564_at Contig23564 - - 1e+0 At1g09932 phosphoglycerate/bisphosphoglycerate mutase-related S.X. H.G.
0.33 42.6 Contig7178_s_at Contig7178 - - 2e+0 At4g35900 FD S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.7 99.8 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
22.8 99.8 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
19.6 99.7 GSM130799 control, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
18.9 99.7 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
17.6 99.6 GSM261032 Dicktoo control-rep3 GSE10329 Low temperature stress in cv. Dicktoo
15.0 99.5 GSM261030 Dicktoo-control-rep1 GSE10329 Low temperature stress in cv. Dicktoo
13.9 99.5 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
13.1 99.4 GSM261031 Dicktoo-control-rep2 GSE10329 Low temperature stress in cv. Dicktoo
11.5 99.3 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
10.7 99.2 GSM130801 salinity stress, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-4 44 Contig22285_at Contig22285 - - 6e-16 At2g04842 EMB2761 (EMBRYO DEFECTIVE 2761) C.G. S.X.
0.03 3e-3 42 Contig25551_at Contig25551 - - 9e-2 At3g43810 CAM7 (CALMODULIN 7) C.G. S.X.
0.03 3e-3 42 Contig24271_at Contig24271 - - 2e+0 At3g13710 PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4) C.G. S.X.
0.01 3e-3 42 Contig4846_at Contig4846 - - 4e-1 At2g42040 - C.G. S.X.
0.02 3e-3 42 Contig23628_at Contig23628 - - 4e-8 At4g31040 proton extrusion protein-related C.G. S.X.
0.03 3e-3 42 Contig24426_at Contig24426 - - 5e+0 At4g03170 DNA binding C.G. S.X.
0.03 3e-3 42 Contig16462_at Contig16462 - - 2e+0 At5g14910 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 3e-3 42 Contig11764_at Contig11764 - - 7e-1 At4g06634 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 3e-3 42 Contig9286_at Contig9286 - - 2e+0 At2g38304 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At3g23200 821898 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 7e+0 32 Glycine max PsAffx.psMA011xB15f_at PsAffx.psMA011xB15f - - 3e+0 At5g40530 - C.G. S.X.
0.10 1e-8 61 Oryza sativa Os10g0207500 AK064393.1 - Conserved hypothetical protein 3e+0 At5g08505 - C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.153007.1.A1_at CV273965 - - 4e+1 At4g37440 unknown protein C.G. S.X.
0.48 2e-64 246 Triticum aestivum Ta.20961.2.S1_at CA628617 - - 4e+0 At1g70690 HWI1 (HOPW1-1-INDUCED GENE1) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1617377_at CB004065 - - 4e+0 At3g12345 unknown protein C.G. S.X.
0.08 4e-11 67 Zea mays Zm.8074.1.A1_at BM072842 hypothetical protein LOC100277124 - 4e-1 At1g52720 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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