Gene omics information

Query gene ID	Contig13428_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	S.X.	H.G.	Please select
0.63	80.3	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig21865_at	Contig21865	-	-	9e-1	At5g45870	Bet v I allergen family protein	S.X.	H.G.	Please select
0.50	66.9	Contig14053_at	Contig14053	-	-	3e-1	At2g45760	BAP2 (BON ASSOCIATION PROTEIN 2)	S.X.	H.G.	Please select
0.50	66.9	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	S.X.	H.G.	Please select
0.40	53.1	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.9	99.7	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
13.3	99.4	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
13.3	99.4	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
11.9	99.3	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.7	99.2	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.9	98.7	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5	98.2	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
6.4	98.1	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2	98.0	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	8e-123	440	Contig13429_at	Contig13429	-	-	1e+0	At5g16550	unknown protein	C.G.	S.X.	Please select
0.40	5e-118	424	Contig7366_s_at	Contig7366	-	-	3e-1	At3g55450	protein kinase, putative	C.G.	S.X.	Please select
0.40	5e-118	424	Contig7366_at	Contig7366	-	-	3e-1	At3g55450	protein kinase, putative	C.G.	S.X.	Please select
0.29	4e-106	385	Contig7367_at	Contig7367	-	-	2e-3	At1g66920	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.22	4e-97	355	Contig22848_at	Contig22848	-	-	3e-1	At3g59640	glycine-rich protein	C.G.	S.X.	Please select
0.22	2e-71	270	Contig19611_at	Contig19611	-	-	4e-1	At5g11120	unknown protein	C.G.	S.X.	Please select
0.42	2e-65	250	AF085165_at	AF085165	-	-	4e-1	At2g39430	disease resistance-responsive protein-related / dirigent protein-related	C.G.	S.X.	Please select
0.23	2e-40	167	AF100770_at	AF100770	-	-	7e-1	At5g56460	protein kinase, putative	C.G.	S.X.	Please select
0.04	3e-11	69	Contig13692_x_at	Contig13692	-	-	3e-1	At5g65640	bHLH093 (beta HLH protein 93)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-5	50	Arabidopsis thaliana	At3g17160	820973	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-2	42	Glycine max	GmaAffx.26077.1.S1_at	AW781964	-	-	1e-10	At2g31840	-	C.G.	S.X.	Please select
0.46	6e-99	363	Oryza sativa	Os01g0117500	9629.m00193	-	LRK14	2e-1	At5g38280	PR5K	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-8	61	Populus trichocarpa	PtpAffx.224545.1.S1_s_at	pmrna43174	hypothetical protein	-	1e-1	At3g06080	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	0	791	Triticum aestivum	TaAffx.42397.1.S1_at	AY584533.1	receptor-like kinase protein	-	5e-2	At1g66910	protein kinase, putative	C.G.	S.X.	Please select
0.04	1e-9	63	Vitis vinifera	1607880_at	BQ793902	hypothetical protein LOC100263570	-	4e-2	At2g02800	APK2B (PROTEIN KINASE 2B)	C.G.	S.X.	Please select
0.03	7e-3	42	Zea mays	Zm.11927.1.A1_at	BM381923	-	-	1e+0	At4g31360	selenium binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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