CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13422_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.3 Contig13422_at Contig13422 - - 5e+0 At5g47200 ATRAB1A S.X. H.G.
0.55 72.0 Contig11427_at Contig11427 - - 1e-4 At1g52730 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.19 19.6 Contig3511_at Contig3511 - - 3e-1 At4g28240 wound-responsive protein-related S.X. H.G.
0.12 10.4 Contig23900_at Contig23900 - - 4e-7 At5g12110 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) S.X. H.G.
0.11 9.4 Contig7629_at Contig7629 - - 3e-6 At5g25610 RD22 S.X. H.G.
0.07 5.8 Contig13968_at Contig13968 - - 4e-1 At4g02600 MLO1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.6 99.8 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
24.8 99.8 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
13.3 99.4 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
12.8 99.4 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
11.7 99.3 GSM419983 Seed_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
11.7 99.3 GSM440977 Control seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
11.2 99.2 GSM146378 Maythorpe shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.8 99.2 GSM146372 Golden Promise shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.5 99.2 GSM419981 Seed_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
10.5 99.2 GSM440975 Control seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 9e-142 502 EBem04_SQ002_C07_s_at EBem04_SQ002_C07 - - 3e+0 At5g19151 unknown protein C.G. S.X.
0.59 9e-142 502 EBem04_SQ002_C07_at EBem04_SQ002_C07 - - 3e+0 At5g19151 unknown protein C.G. S.X.
0.18 2e-38 159 Contig13312_at Contig13312 - - 5e+0 At5g59880 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) C.G. S.X.
0.19 1e-23 109 Contig14312_at Contig14312 - - 3e+0 At1g61930 unknown protein C.G. S.X.
0.24 1e-20 99 EBro07_SQ002_H02_at EBro07_SQ002_H02 - - 2e+0 At5g45970 ARAC2 (ARABIDOPSIS RAC-LIKE 2) C.G. S.X.
0.07 1e-8 59 Contig10663_at Contig10663 - - 9e+0 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) C.G. S.X.
0.07 2e-4 46 Contig10718_at Contig10718 - - 2e-7 At1g78440 ATGA2OX1 (gibberellin 2-oxidase 1) C.G. S.X.
0.03 3e-3 42 Contig7480_at Contig7480 - - 9e+0 At2g25700 ASK3 (ARABIDOPSIS SKP1-LIKE 3) C.G. S.X.
0.03 3e-3 42 Contig7479_at Contig7479 - - 2e+0 At5g25750 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At5g47200 834766 ATRAB1A F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA - - - C.G. S.X.
0.03 2e-3 44 Glycine max PsAffx.C115000032_at PsAffx.C115000032 - - 7e+0 At2g07521 unknown protein C.G. S.X.
0.10 2e-7 57 Oryza sativa Os03g0860600 AK071828.1 - - 1e-2 At3g61400 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.216361.1.S1_at pmrna31081 hypothetical protein - 1e+0 At2g01250 60S ribosomal protein L7 (RPL7B) C.G. S.X.
0.33 3e-51 202 Triticum aestivum Ta.22147.1.S1_at AJ614958 - - 4e+0 At5g59880 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1622847_a_at CF403381 hypothetical protein LOC100251447 - 5e-9 At4g18380 F-box family protein C.G. S.X.
0.06 4e-2 38 Zea mays Zm.17656.1.S1_at CK369512 - - 5e+0 At4g08151 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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