Gene omics information

Query gene ID	Contig13383_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig13383_at	Contig13383	-	-	1e-8	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	S.X.	H.G.	Please select
0.80	92.5	Contig26243_s_at	Contig26243	-	-	4e-6	At3g17300	-	S.X.	H.G.	Please select
0.67	84.7	Contig10688_at	Contig10688	-	-	8e+0	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	S.X.	H.G.	Please select
0.60	77.3	Contig15475_at	Contig15475	-	-	4e-2	At4g20860	FAD-binding domain-containing protein	S.X.	H.G.	Please select
0.53	69.7	Contig10689_at	Contig10689	-	-	3e-10	At2g40360	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.44	58.9	Contig3881_at	Contig3881	-	-	2e-21	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.4	99.8	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
26.6	99.8	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
25.7	99.8	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
20.2	99.7	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.8	99.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.3	99.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.2	99.4	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.2	99.1	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.0	99.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.4	98.8	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	1e-108	393	EBro03_SQ007_M15_at	EBro03_SQ007_M15	-	-	9e+0	At5g16920	-	C.G.	S.X.	Please select
0.28	1e-108	393	EBro03_SQ007_M15_s_at	EBro03_SQ007_M15	-	-	9e+0	At5g16920	-	C.G.	S.X.	Please select
0.30	2e-95	349	Contig20521_at	Contig20521	-	-	4e-4	At1g48210	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.06	1e-10	67	Contig14065_at	Contig14065	-	-	6e-8	At5g49770	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.04	2e-9	63	Contig21417_at	Contig21417	-	-	3e-2	At1g48480	RKL1	C.G.	S.X.	Please select
0.03	1e-7	57	Contig10767_at	Contig10767	-	-	3e-15	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select
0.03	4e-7	56	Contig13821_at	Contig13821	-	-	5e-4	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	C.G.	S.X.	Please select
0.04	2e-6	54	Contig20428_at	Contig20428	-	-	5e-4	At5g02070	protein kinase-related	C.G.	S.X.	Please select
0.04	2e-6	54	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-8	61	Arabidopsis thaliana	At2g48010	819413	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	receptor-like serine/threonine kinase (RKF3)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-3	44	Glycine max	GmaAffx.40192.1.S1_at	BI497834	-	-	4e-4	At5g65710	HSL2 (HAESA-Like 2)	C.G.	S.X.	Please select
0.07	3e-26	121	Oryza sativa	Os.49411.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e-3	46	Populus trichocarpa	PtpAffx.2284.1.S1_s_at	BP932280	hypothetical protein	-	3e-16	At1g75820	CLV1 (CLAVATA 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	2e-155	549	Triticum aestivum	TaAffx.15408.1.A1_at	CD453842	-	-	6e-4	At1g49730	protein kinase family protein	C.G.	S.X.	Please select
0.04	2e-10	65	Vitis vinifera	1616189_at	CF511570	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	C.G.	S.X.	Please select
0.05	3e-4	46	Zea mays	ZmAffx.812.1.A1_at	AI770420	-	-	8e-4	At1g49730	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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