CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13332_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig13332_at Contig13332 - - 2e+0 At1g68280 thioesterase-related S.X. H.G.
0.50 66.9 Contig24555_at Contig24555 - - 1e+0 At2g45070 SEC61 BETA S.X. H.G.
0.50 66.9 Contig9632_at Contig9632 - - 1e-1 At1g78370 ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) S.X. H.G.
0.43 56.4 Contig12594_at Contig12594 - - 3e+0 At5g11990 proline-rich family protein S.X. H.G.
0.40 53.1 Contig18794_at Contig18794 - - 8e+0 At3g54940 - S.X. H.G.
0.35 45.1 Contig5234_at Contig5234 - - 5e-11 At1g09140 SF2/ASF-like splicing modulator (SRP30) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 97.7 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.5 96.7 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.4 96.6 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
3.6 95.3 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5 95.1 GSM146372 Golden Promise shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3 94.6 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.2 94.3 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.1 94.1 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.1 94.1 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 36 Contig8499_at Contig8499 - - 3e-7 At1g03280 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein C.G. S.X.
0.03 9e-1 34 HV11G16u_at HV11G16u - - 3e+0 At4g13010 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.02 9e-1 34 HVSMEh0085D01r2_at HVSMEh0085D01r2 - - 4e+0 At4g21920 unknown protein C.G. S.X.
0.02 4e+0 32 HVSMEf0016O08r2_s_at HVSMEf0016O08r2 - - 6e-2 At5g51360 - C.G. S.X.
0.01 4e+0 32 Contig8494_at Contig8494 molybdenum cofactor biosynthesis protein Cnx1 - 5e-3 At5g20990 B73 C.G. S.X.
0.02 4e+0 32 Contig7522_s_at Contig7522 - - 2e+0 At2g42390 protein kinase C substrate, heavy chain-related C.G. S.X.
0.01 4e+0 32 Contig10569_at Contig10569 - - 3e-19 At1g66750 CAK4 (CDK-ACTIVATING KINASE 4) C.G. S.X.
0.02 4e+0 32 Contig7522_at Contig7522 - - 2e+0 At2g42390 protein kinase C substrate, heavy chain-related C.G. S.X.
0.02 4e+0 32 HV_CEb0014D14r2_at HV_CEb0014D14r2 - - 5e+0 At3g45020 50S ribosomal protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At1g68280 843157 thioesterase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPA - - - C.G. S.X.
0.03 7e-1 36 Glycine max Gma.13791.1.A1_at CD405454 - - 6e-1 At1g64405 unknown protein C.G. S.X.
0.23 6e-45 182 Oryza sativa OsAffx.2346.1.S1_at - - - 0 C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.206687.1.S1_at pmrna13266 hypothetical protein - 1e-6 At5g56840 DNA-binding family protein C.G. S.X.
0.45 0 761 Triticum aestivum TaAffx.4392.1.A1_at BQ281739 - - 6e-1 At2g44680 CKB4 (CASEIN KINASE II BETA SUBUNIT 4) C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1615938_at CF208490 hypothetical protein LOC100244729 - 8e-51 At5g62700 TUB3 C.G. S.X.
0.14 1e-39 163 Zea mays Zm.6971.1.A1_at AY107357.1 - - 1e-1 At1g58460 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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