CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13318_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig13318_at Contig13318 - - 1e-2 At3g59010 pectinesterase family protein S.X. H.G.
0.77 90.8 Contig10453_at Contig10453 - - 9e-1 At5g19485 transferase S.X. H.G.
0.67 84.7 Contig11946_at Contig11946 - - 2e+0 At1g49950 DNA-binding protein, putative S.X. H.G.
0.63 80.3 Contig5966_at Contig5966 - - 9e-2 At4g33360 terpene cyclase/mutase-related S.X. H.G.
0.50 66.9 Contig5490_at Contig5490 - - 3e-1 At3g14680 CYP72A14 S.X. H.G.
0.38 49.5 Contig5763_s_at Contig5763 C-8,7-sterol isomerase - 2e+0 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.3 99.7 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.2 99.5 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
13.6 99.5 GSM146372 Golden Promise shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.0 99.4 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
12.4 99.4 GSM71148 OWB-R unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
11.5 99.3 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.8 99.2 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
10.7 99.2 GSM130799 control, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
9.9 99.1 GSM68891 3 h control replicate 3 GSE3097 Barley1 salinity stress study
9.7 99.0 GSM130801 salinity stress, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-11 67 HM03L14u_at HM03L14u - - 9e+0 At5g02750 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.05 5e-3 42 Contig15944_at Contig15944 - - 9e-1 At3g50040 unknown protein C.G. S.X.
0.02 2e-2 40 Contig6004_x_at Contig6004 - - 1e+0 At4g01640 - C.G. S.X.
0.02 2e-2 40 Contig619_at Contig619 - - 8e-10 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative C.G. S.X.
0.02 2e-2 40 Contig6004_at Contig6004 - - 1e+0 At4g01640 - C.G. S.X.
0.02 7e-2 38 Contig610_at Contig610 - - 1e-1 At3g01500 CA1 (CARBONIC ANHYDRASE 1) C.G. S.X.
0.01 3e-1 36 Contig1860_x_at Contig1860 - - 2e-3 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.01 3e-1 36 Contig1860_s_at Contig1860 - - 2e-3 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.02 3e-1 36 Contig10054_s_at Contig10054 - - 3e-1 At2g37790 aldo/keto reductase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-2 42 Arabidopsis thaliana At3g59010 825070 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO - - - C.G. S.X.
0.09 6e-5 50 Glycine max Gma.2182.1.S1_at CA784884 - - 2e-1 At3g14310 ATPME3 C.G. S.X.
0.60 0 876 Oryza sativa Os01g0312500 AK105998.1 - Pectin methylesterase isoform alpha (EC 3.1.1.11)(Fragment) 2e-2 At3g14310 ATPME3 C.G. S.X.
0.05 8e-1 36 Populus trichocarpa PtpAffx.61168.1.S1_at DN491681 hypothetical protein - 1e-1 At4g02300 pectinesterase family protein C.G. S.X.
0.74 0 1271 Triticum aestivum TaAffx.99157.1.S1_at CK211986 - - 1e-2 At4g00190 pectinesterase family protein C.G. S.X.
0.12 5e-14 77 Vitis vinifera 1615574_at CB977067 hypothetical protein LOC100245304 - 7e-9 At2g45220 pectinesterase family protein C.G. S.X.
0.57 0 843 Zea mays Zm.14962.1.A1_at BM268018 hypothetical protein LOC100280285 - 2e-1 At3g59010 pectinesterase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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