CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13295_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 88.7 Contig13295_at Contig13295 - - 5e-1 At2g19750 40S ribosomal protein S30 (RPS30A) S.X. H.G.
0.61 78.7 HA07k01r_at HA07k01r - - 1e+0 At3g48640 unknown protein S.X. H.G.
0.56 74.3 HU14G08u_s_at HU14G08u - - 3e-1 At5g38400 unknown protein S.X. H.G.
0.56 74.3 Contig9561_at Contig9561 - - 1e+1 At4g15780 ATVAMP724 S.X. H.G.
0.52 68.3 HX05P09r_at HX05P09r - - 9e-1 At5g60350 unknown protein S.X. H.G.
0.48 63.2 Contig2339_at Contig2339 - - 5e-12 At4g15000 60S ribosomal protein L27 (RPL27C) S.X. H.G.
0.48 63.2 Contig15427_at Contig15427 - - 7e+0 At4g29110 unknown protein S.X. H.G.
0.47 62.2 Contig15728_at Contig15728 - - 2e+0 At3g21215 RNA-binding protein, putative S.X. H.G.
0.43 56.4 HU14G08u_at HU14G08u - - 3e-1 At5g38400 unknown protein S.X. H.G.
0.43 56.4 Contig12675_s_at Contig12675 - - 1e+0 At4g28150 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.3 99.8 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
15.6 99.6 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
14.5 99.5 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
10.9 99.2 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.7 97.7 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.2 97.4 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8 97.0 GSM431568 pathogen isolates: Mock inoculated control - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.3 96.4 GSM419975 Palea_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
4.3 96.4 GSM440963 Control palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.8 95.7 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.56 0 666 HV_CEb0009O15r2_s_at HV_CEb0009O15r2 - - 2e-1 At2g19750 40S ribosomal protein S30 (RPS30A) C.G. S.X.
0.03 7e-5 48 Contig2470_s_at Contig2470 - - 1e-1 At4g16380 metal ion binding C.G. S.X.
0.02 3e-4 46 Contig8192_at Contig8192 - - 6e-8 At1g16610 SR45 C.G. S.X.
0.02 3e-4 46 Contig15028_at Contig15028 - - 4e-1 At1g35310 MLP168 (MLP-LIKE PROTEIN 168) C.G. S.X.
0.02 3e-4 46 Contig17301_at Contig17301 - - 1e-2 At1g28280 VQ motif-containing protein C.G. S.X.
0.02 1e-3 44 Contig8628_at Contig8628 - - 6e-1 At1g64370 unknown protein C.G. S.X.
0.02 1e-3 44 Contig6495_at Contig6495 - - 7e-1 At3g03870 unknown protein C.G. S.X.
0.02 2e-2 40 Contig5918_at Contig5918 - - 9e-6 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.03 2e-2 40 Contig20407_at Contig20407 - - 1e+0 At1g36940 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Arabidopsis thaliana At2g19750 816494 40S ribosomal protein S30 (RPS30A) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAV - - - C.G. S.X.
0.03 5e-2 40 Glycine max GmaAffx.78496.1.S1_at BM085121 - - 3e-1 At1g24540 CYP86C1 C.G. S.X.
0.20 9e-26 119 Oryza sativa Os03g0723700 AK101260.1 - - 5e-1 At1g61667 unknown protein C.G. S.X.
0.03 5e-5 50 Populus trichocarpa PtpAffx.219189.1.S1_at pmrna35039 hypothetical protein - 2e+0 At5g23250 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative C.G. S.X.
0.03 6e-4 46 Triticum aestivum Ta.24128.3.S1_x_at BQ168063 - - 5e-22 At2g21580 40S ribosomal protein S25 (RPS25B) C.G. S.X.
0.02 2e-3 42 Vitis vinifera 1610837_at CB976769 - - 2e+0 At3g17140 invertase inhibitor-related C.G. S.X.
0.03 1e-6 54 Zea mays Zm.7391.1.A1_at BM333950 elongation factor P - 5e-1 At3g13227 serine-rich protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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