Gene omics information

Query gene ID	Contig13294_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig13294_at	Contig13294	-	-	6e+0	At5g28463	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	S.X.	H.G.	Please select
0.50	66.9	Contig5960_at	Contig5960	-	-	1e-16	At3g18880	ribosomal protein S17 family protein	S.X.	H.G.	Please select
0.40	53.1	Contig14103_at	Contig14103	-	-	2e-1	At4g19040	EDR2	S.X.	H.G.	Please select
0.36	47.1	Contig7886_at	Contig7886	-	-	8e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	S.X.	H.G.	Please select
0.31	38.6	Contig5327_at	Contig5327	-	-	1e-16	At3g07770	ATP binding	S.X.	H.G.	Please select
0.27	32.1	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
56.0	100.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
44.7	99.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
39.0	99.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
31.0	99.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
25.4	99.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
20.4	99.7	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.2	99.6	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
17.0	99.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.2	99.4	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
10.5	99.2	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	3e-40	165	HVSMEm0012J18r2_at	HVSMEm0012J18r2	-	-	3e-1	At3g03000	calmodulin, putative	C.G.	S.X.	Please select
0.04	5e-2	38	Contig16277_at	Contig16277	-	-	5e+0	At5g61570	protein kinase family protein	C.G.	S.X.	Please select
0.03	5e-2	38	Contig14077_at	Contig14077	-	-	2e+0	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	C.G.	S.X.	Please select
0.03	5e-2	38	Contig9824_at	Contig9824	-	-	1e+0	At5g26800	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig1829_at	Contig1829	-	-	1e-2	At2g15490	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig14826_at	Contig14826	-	-	3e-1	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig1820_at	Contig1820	-	-	8e-3	At2g15490	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig19290_at	Contig19290	-	-	7e+0	At5g65020	ANNAT2 (Annexin Arabidopsis 2)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig14827_s_at	Contig14827	-	-	3e-1	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At5g28463	832934	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.59500.3.S1_at	BG790368	-	-	2e+0	At5g57181	unknown protein	C.G.	S.X.	Please select
0.15	9e-50	198	Oryza sativa	Os04g0565200	AK111866.1	-	Cis-zeatin O-glucosyltransferase	6e-2	At2g43840	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.220565.1.S1_at	pmrna36970	hypothetical protein	-	8e+0	At5g35732	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	6e-71	268	Triticum aestivum	TaAffx.17044.1.S1_at	AL820408	-	-	9e+0	At2g23260	UGT84B1 (UDP-glucosyl transferase 84B1)	C.G.	S.X.	Please select
0.04	8e-3	40	Vitis vinifera	1608932_at	CB982469	hypothetical protein LOC100248024	-	7e-2	At5g25890	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	C.G.	S.X.	Please select
0.12	7e-44	176	Zea mays	Zm.663.1.S1_at	AF318075.1	cis-zeatin O-glucosyltransferase1	-	7e-1	At5g59580	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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