Gene omics information

Query gene ID	Contig13239_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig13239_at	Contig13239	-	-	2e+0	At1g58460	unknown protein	S.X.	H.G.	Please select
0.19	19.6	Contig14890_at	Contig14890	-	-	5e-2	At2g18320	-	S.X.	H.G.	Please select
0.18	18.2	HVSMEb0006K18r2_at	HVSMEb0006K18r2	-	-	7e-2	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	S.X.	H.G.	Please select
0.04	3.4	Contig12897_at	Contig12897	-	-	1e-3	At4g28600	NPGR2 (no pollen germination related 2)	S.X.	H.G.	Please select
0.04	3.4	EBem06_SQ003_J07_at	EBem06_SQ003_J07	-	-	3e+0	At2g42530	COR15B (COLD REGULATED 15B)	S.X.	H.G.	Please select
0.04	3.4	Contig22044_at	Contig22044	-	-	2e-39	At2g36170	ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.2	99.8	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
26.2	99.8	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
20.4	99.7	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
20.4	99.7	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
18.6	99.7	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
14.0	99.5	GSM261029	ABA-Late-rep3	GSE10328	ABA experiment
11.2	99.2	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
11.1	99.2	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.1	99.2	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.5	99.0	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	38	Contig10245_at	Contig10245	-	-	2e+0	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	C.G.	S.X.	Please select
0.02	6e-2	38	Contig6856_at	Contig6856	-	-	2e+0	At5g51110	4-alpha-hydroxytetrahydrobiopterin dehydratase	C.G.	S.X.	Please select
0.01	2e-1	36	Contig9814_at	Contig9814	-	-	8e-1	At4g19270	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	S0001000057A05F1_at	S0001000057A05F1	-	-	9e+0	At5g47830	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig25867_at	Contig25867	-	-	5e-2	At2g21490	LEA (DEHYDRIN LEA)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig24136_at	Contig24136	-	-	2e-39	At2g47110	UBQ6	C.G.	S.X.	Please select
0.03	2e-1	36	Contig20892_at	Contig20892	-	-	2e+0	At3g29300	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig12448_at	Contig12448	-	-	5e-21	At1g31930	XLG3 (extra-large GTP-binding protein 3)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig11653_s_at	Contig11653	-	-	8e+0	At4g40011	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g58460	842215	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	PsAffx.CL365Contig1_s_at	PsAffx.CL365Contig1	-	-	4e+0	At5g23840	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	C.G.	S.X.	Please select
0.18	1e-21	105	Oryza sativa	Os01g0110200	AK109646.1	-	Conserved hypothetical protein	2e+0	At1g73165	CLE1 (CLAVATA3/ESR-RELATED 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.133537.1.A1_at	CV271849	-	-	3e-16	At5g08415	lipoic acid synthase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	4e-88	325	Triticum aestivum	Ta.13161.1.S1_at	CK212639	-	-	2e+0	At1g58460	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Vitis vinifera	1607977_at	CF213224	hypothetical protein LOC100259371	-	1e+0	At1g49200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	8e-1	34	Zea mays	Zm.4987.1.A1_at	BM380442	hypothetical protein LOC100194192	-	1e+0	At5g24830	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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