Gene omics information

Query gene ID Contig13235_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5369.7Contig13235_atContig13235--8e-25At1g80930MIF4G domain-containing protein / MA3 domain-containing proteinS.X.H.G.
0.4458.9Contig15139_atContig15139--9e-2At1g02180ferredoxin-relatedS.X.H.G.
0.4458.9HVSMEf0001F16r2_s_atHVSMEf0001F16r2--2e+0At1g64490unknown proteinS.X.H.G.
0.4458.9Contig25411_atContig25411--2e+0At2g29540ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT)S.X.H.G.
0.4255.2Contig14670_atContig14670--5e-1At5g44210ERF9 (ERF DOMAIN PROTEIN 9)S.X.H.G.
0.4053.1Contig26151_atContig26151--1e+0At1g49990-S.X.H.G.
0.3240.3Contig5427_atContig5427--7e-14At2g20900diacylglycerol kinase, putativeS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.999.1GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
9.699.0GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.298.7GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.898.6GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
6.097.9GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barley
5.297.4GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.297.4GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stress
5.097.2GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.097.2GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.997.1GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-136HVSMEf0004A21r2_atHVSMEf0004A21r2--2e-1At2g14045unknown proteinC.G.S.X.
0.011e+034Contig8687_atContig8687--2e-1At5g17740AAA-type ATPase family proteinC.G.S.X.
0.021e+034Contig8840_atContig8840--4e-1At3g55680invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.011e+034Contig8687_s_atContig8687--2e-1At5g17740AAA-type ATPase family proteinC.G.S.X.
0.024e+032EBro02_SQ005_L23_atEBro02_SQ005_L23--1e-3At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)C.G.S.X.
0.024e+032Contig7467_atContig7467--2e+0At5g67580TRB2C.G.S.X.
0.014e+032Contig18449_atContig18449--2e+0At5g37640UBQ9C.G.S.X.
0.024e+032HB14O12r_atHB14O12r--4e+0At5g24316proline-rich family proteinC.G.S.X.
0.024e+032Contig13189_atContig13189--7e-5At5g67640unknown proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.208e-25115Arabidopsis thalianaAt1g80930844433MIF4G domain-containing protein / MA3 domain-containing proteinF:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cytosol, nucleus;MOFBPVA---C.G.S.X.
0.333e-40167Glycine maxGma.8911.3.S1_atBU091546--2e-48At1g80930MIF4G domain-containing protein / MA3 domain-containing proteinC.G.S.X.
0.282e-137490Oryza sativaOs12g0256300AK099579.1-Schizosaccharomyces pombe (Fragment)6e-43At1g80930MIF4G domain-containing protein / MA3 domain-containing proteinC.G.S.X.
0.186e-51202Populus trichocarpaPtpAffx.213645.1.S1_atpmrna26652hypothetical protein-2e-61At1g80930MIF4G domain-containing protein / MA3 domain-containing proteinC.G.S.X.
0.7101140Triticum aestivumTa.28538.1.S1_atBJ274371--1e-36At1g80930MIF4G domain-containing protein / MA3 domain-containing proteinC.G.S.X.
0.047e-134Vitis vinifera1616251_atCF213754hypothetical protein LOC100247254-1e-4At2g22080unknown proteinC.G.S.X.
0.024e+032Zea maysZm.4659.1.A1_atCF014132--6e+0At3g29690transferase-relatedC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage