Gene omics information

Query gene ID	Contig13233_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig13233_at	Contig13233	-	-	5e-1	At2g42260	UVI4 (UV-B-INSENSITIVE 4)	S.X.	H.G.	Please select
0.60	77.3	Contig9794_at	Contig9794	-	-	4e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	S.X.	H.G.	Please select
0.50	66.9	Contig9793_at	Contig9793	-	-	8e-26	At1g61140	EDA16 (embryo sac development arrest 16)	S.X.	H.G.	Please select
0.38	49.5	Contig7031_at	Contig7031	-	-	7e-1	At1g58100	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.33	42.6	Contig19644_at	Contig19644	-	-	1e+0	At1g79790	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.17	16.9	HVSMEf0009N22f_at	HVSMEf0009N22f	-	-	3e-2	At4g29170	ATMND1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	99.2	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
10.5	99.2	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
10.0	99.1	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
9.4	99.0	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
8.5	98.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
8.1	98.7	GSM160744	drought control rep2	GSE6990	Barley drought stress
7.8	98.6	GSM261039	Dicktoo-deacclimation-rep1	GSE10329	Low temperature stress in cv. Dicktoo
7.0	98.4	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.1	98.0	GSM372997	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.2	97.4	GSM372989	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	3e-59	228	Contig18751_at	Contig18751	-	-	2e+0	At2g18721	unknown protein	C.G.	S.X.	Please select
0.35	3e-50	198	Contig19287_at	Contig19287	-	-	2e+0	At4g27657	unknown protein	C.G.	S.X.	Please select
0.25	3e-50	198	Contig16035_at	Contig16035	-	-	6e+0	At3g47590	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.26	4e-46	184	HF21E11r_at	HF21E11r	-	-	1e+0	At5g48657	defense protein-related	C.G.	S.X.	Please select
0.35	9e-41	167	HM02P02u_at	HM02P02u	-	-	4e+0	At5g61640	PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)	C.G.	S.X.	Please select
0.22	2e-32	139	Contig20711_at	Contig20711	-	-	1e+0	At3g50337	unknown protein	C.G.	S.X.	Please select
0.22	7e-20	97	Contig26145_at	Contig26145	-	-	4e-1	At1g65170	ubiquitin carboxyl-terminal hydrolase family protein	C.G.	S.X.	Please select
0.34	2e-17	89	HVSMEc0014N06r2_at	HVSMEc0014N06r2	-	-	1e+0	At5g44140	ATPHB7 (PROHIBITIN 7)	C.G.	S.X.	Please select
0.14	1e-15	83	Contig10653_at	Contig10653	-	-	2e+0	At5g57660	zinc finger (B-box type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At2g42260	818827	UVI4 (UV-B-INSENSITIVE 4)	Encodes a novel plant-specific protein of unknown function. The UVI4 gene is expressed mainly in actively dividing cells. The hypocotyl cells in mutant seedlings undergo one extra round of endoreduplication. The uvi4 mutation also promoted the progression of endo-reduplication during leaf development.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-2	42	Glycine max	GmaAffx.12286.2.S1_at	BM108265	-	-	1e-11	At5g38510	rhomboid family protein	C.G.	S.X.	Please select
0.02	1e-2	42	Oryza sativa	Os11g0479000	AK107976.1	-	Hypothetical protein	4e-1	At5g19875	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.15197.1.S1_at	CX181414	hypothetical protein	-	1e-3	At4g25225	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	1e-4	48	Triticum aestivum	TaAffx.119446.1.A1_at	BJ272095	-	-	2e-1	At3g44570	unknown protein	C.G.	S.X.	Please select
0.04	6e-4	44	Vitis vinifera	1609955_at	CA810705	hypothetical protein LOC100267740	-	8e-2	At1g73790	unknown protein	C.G.	S.X.	Please select
0.03	3e-3	42	Zea mays	Zm.12295.2.S1_a_at	CD441109	stress responsive protein	-	2e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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