Gene omics information

Query gene ID	Contig13227_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig13227_at	Contig13227	-	-	2e-1	At3g52380	CP33	S.X.	H.G.	Please select
0.40	53.1	Contig14223_at	Contig14223	-	-	2e+0	At3g61870	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig1797_x_at	Contig1797	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.33	42.6	Contig6776_s_at	Contig6776	-	-	2e-3	At1g20850	XCP2 (xylem cysteine peptidase 2)	S.X.	H.G.	Please select
0.29	35.5	HB14A07r_x_at	HB14A07r	-	-	3e+0	At2g37435	cysteine-type endopeptidase inhibitor	S.X.	H.G.	Please select
0.27	32.1	Contig9662_at	Contig9662	-	-	4e-15	At5g26340	MSS1	S.X.	H.G.	Please select
0.12	10.4	Contig4621_at	Contig4621	-	-	3e+0	At3g08000	RNA-binding protein, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.6	98.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.9	98.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.9	97.9	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.0	97.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-4	48	Contig18358_x_at	Contig18358	-	-	2e-1	At3g52380	CP33	C.G.	S.X.	Please select
0.02	1e-4	48	Contig4053_s_at	Contig4053	-	-	8e-3	At4g39550	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.02	1e-3	44	Contig14922_at	Contig14922	-	-	2e+0	At4g15800	RALFL33 (ralf-like 33)	C.G.	S.X.	Please select
0.02	6e-3	42	Contig19758_at	Contig19758	-	-	2e-1	At1g14345	oxidoreductase	C.G.	S.X.	Please select
0.01	2e-2	40	Contig2857_at	Contig2857	-	-	4e-3	At1g66680	AR401	C.G.	S.X.	Please select
0.01	4e-1	36	Contig8951_at	Contig8951	-	-	9e-4	At4g00090	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	4e-1	36	Contig6470_at	Contig6470	-	-	1e-3	At5g55290	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig5737_at	Contig5737	-	-	2e-1	At2g36261	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	Contig13013_at	Contig13013	-	-	1e-4	At1g80170	polygalacturonase, putative / pectinase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At3g52380	824403	CP33	chloroplast RNA-binding protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.17295.1.S1_at	BE660295	-	-	3e+0	At4g28140	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.07	1e-16	89	Oryza sativa	Os07g0554600	AK072955.1	-	Hypothetical protein	2e-1	At3g60530	zinc finger (GATA type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.218502.1.S1_at	pmrna34150	hypothetical protein	-	4e-1	At3g18520	HDA15	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	6e-20	99	Triticum aestivum	TaAffx.4432.1.S1_at	CA741958	-	-	1e+0	At5g16160	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1622003_at	CF415247	hypothetical protein LOC100251511	-	3e-1	At3g15357	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.10432.1.A1_at	AY111714.1	Alkaline alpha galactosidase 1	-	2e+1	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage