Gene omics information

Query gene ID	Contig1321_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	94.5	Contig1321_at	Contig1321	-	-	3e-88	At5g37780	CAM1 (CALMODULIN 1)	S.X.	H.G.	Please select
0.48	63.2	Contig3498_at	Contig3498	-	-	7e-59	At5g06360	ribosomal protein S8e family protein	S.X.	H.G.	Please select
0.47	62.2	Contig15721_at	Contig15721	-	-	1e+0	At5g59360	unknown protein	S.X.	H.G.	Please select
0.45	59.3	Contig9982_at	Contig9982	-	-	1e-2	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	S.X.	H.G.	Please select
0.40	53.1	Contig5352_at	Contig5352	-	-	2e+0	At5g62900	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig5024_at	Contig5024	-	-	1e+1	At5g17080	cathepsin-related	S.X.	H.G.	Please select
0.36	47.1	Contig8533_s_at	Contig8533	-	-	6e-1	At5g66940	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.36	47.1	Contig903_at	Contig903	-	-	5e-11	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.35	45.1	rbaal1o24_at	rbaal1o24	-	-	4e-50	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.33	42.6	Contig26512_at	Contig26512	-	-	2e-13	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	99.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.2	99.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.5	98.8	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1	98.4	GSM372966	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.0	98.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9	98.3	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6	98.2	GSM372946	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2	98.0	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.1	98.0	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9	97.9	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	2e-152	537	Contig1327_at	Contig1327	-	-	1e-94	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.48	4e-151	533	Contig1328_s_at	Contig1328	-	-	3e-82	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.44	7e-134	476	Contig1340_at	Contig1340	-	-	2e-55	At5g21274	CAM6 (CALMODULIN 6)	C.G.	S.X.	Please select
0.46	5e-132	470	Contig1323_s_at	Contig1323	-	-	1e-72	At3g56800	CAM3 (CALMODULIN 3)	C.G.	S.X.	Please select
0.45	5e-132	470	Contig1336_at	Contig1336	-	-	6e-68	At3g56800	CAM3 (CALMODULIN 3)	C.G.	S.X.	Please select
0.45	2e-131	468	Contig1339_at	Contig1339	-	-	4e-66	At3g56800	CAM3 (CALMODULIN 3)	C.G.	S.X.	Please select
0.47	6e-119	426	Contig1338_s_at	Contig1338	-	-	2e-73	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.47	6e-119	426	Contig1338_at	Contig1338	-	-	2e-73	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.44	2e-106	385	Contig1330_at	Contig1330	-	-	2e-95	At3g56800	CAM3 (CALMODULIN 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	3e-88	325	Arabidopsis thaliana	At5g37780	833756	CAM1 (CALMODULIN 1)	encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.52	3e-98	359	Glycine max	GmaAffx.91756.1.S1_at	CF807481	Calmodulin (SCaM-2)	-	2e-85	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.55	7e-125	448	Oryza sativa	Os07g0687200	AF441191.1	-	Calmodulin (CaM) (BC329)	2e-108	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	3e-89	329	Populus trichocarpa	Ptp.1551.2.S1_at	BU882242	hypothetical protein	-	6e-98	At5g21274	CAM6 (CALMODULIN 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	1122	Triticum aestivum	Ta.5403.1.S1_at	BJ298697	calmodulin TaCaM4-1	-	2e-83	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.37	1e-81	301	Vitis vinifera	1610944_at	BQ794641	hypothetical protein LOC100261610	-	1e-103	At5g21274	CAM6 (CALMODULIN 6)	C.G.	S.X.	Please select
0.44	2e-165	581	Zea mays	Zm.3077.1.A1_at	CF637365	calmodulin	-	4e-82	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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