Gene omics information

Query gene ID	Contig13215_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig13215_at	Contig13215	-	-	3e-10	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	S.X.	H.G.	Please select
0.48	63.2	Contig20382_at	Contig20382	-	-	4e-1	At1g53910	RAP2.12	S.X.	H.G.	Please select
0.46	61.0	Contig16664_at	Contig16664	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	S.X.	H.G.	Please select
0.45	59.3	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.44	58.9	Contig15852_at	Contig15852	-	-	1e-33	At1g29940	NRPA2	S.X.	H.G.	Please select
0.44	58.9	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.43	56.4	Contig18946_at	Contig18946	-	-	1e+0	At5g65220	ribosomal protein L29 family protein	S.X.	H.G.	Please select
0.37	47.9	Contig8972_at	Contig8972	-	-	8e-10	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	S.X.	H.G.	Please select
0.36	47.1	Contig21045_at	Contig21045	-	-	4e+0	At5g51130	methyltransferase	S.X.	H.G.	Please select
0.36	47.1	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.8	99.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
34.4	99.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
30.3	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
27.9	99.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
18.1	99.7	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
15.4	99.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.5	99.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.3	99.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.8	99.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.7	99.3	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	1e-13	77	Contig4147_at	Contig4147	-	-	5e-6	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	C.G.	S.X.	Please select
0.03	1e-7	57	Contig6672_s_at	Contig6672	-	-	2e-1	At1g14455	unknown protein	C.G.	S.X.	Please select
0.09	1e-7	57	Contig6671_at	Contig6671	-	-	2e-2	At4g39000	AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)	C.G.	S.X.	Please select
0.02	1e-1	38	Contig4745_at	Contig4745	-	-	2e+0	At5g37520	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig5198_s_at	Contig5198	-	-	5e+0	At4g02130	GATL6	C.G.	S.X.	Please select
0.02	1e-1	38	Contig4745_s_at	Contig4745	-	-	2e+0	At5g37520	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig11582_at	Contig11582	-	-	4e-6	At1g24120	ARL1 (ARG1-LIKE 1)	C.G.	S.X.	Please select
0.01	1e-1	38	Contig10190_at	Contig10190	-	-	3e-15	At5g30490	-	C.G.	S.X.	Please select
0.01	1e-1	38	HVSMEl0010B09r2_at	HVSMEl0010B09r2	-	-	5e+0	At4g18620	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-10	67	Arabidopsis thaliana	At5g49720	835035	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	Encodes a membrane-bound endo-1,4-beta-D-glucanase, involved in cellulose biosynthesis. Loss-of-function mutants have severe cellulose-deficient phenotypes. During cell elongation, KOR1 is associated with Golgi apparatus and early endosome. Inhibition of cellulose biosynthesis promoted a redistribution of KOR1 in subcellular locations. These observations suggest that deposition of cellulose involves the intracellular cycling of KOR1.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	8e-27	123	Glycine max	GmaAffx.90341.1.S1_s_at	CF806066	endo-1,4-beta-glucancase precursor	-	1e-46	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	C.G.	S.X.	Please select
0.61	4e-134	480	Oryza sativa	Os03g0329500	AK102748.1	-	Endo-1,4-beta-glucanase (EC 3.2.1.4)	6e-24	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	9e-8	59	Populus trichocarpa	Ptp.1897.1.S1_a_at	AY660967.1	hypothetical protein	-	4e-56	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	5e-12	73	Triticum aestivum	Ta.4878.1.S1_at	AY091512.1	endo-1,4-beta-glucanase	-	5e-3	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	C.G.	S.X.	Please select
0.14	5e-12	71	Vitis vinifera	1617920_at	CF609275	hypothetical protein LOC100251815	-	7e-40	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	C.G.	S.X.	Please select
0.26	1e-65	250	Zea mays	Zm.18342.1.A1_at	CO529213	endo-1,4-beta-glucanase	-	6e-9	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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