Gene omics information

Query gene ID	Contig13189_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	94.3	Contig13189_at	Contig13189	-	-	7e-5	At5g67640	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig8068_at	Contig8068	-	-	3e+0	At2g30560	glycine-rich protein	S.X.	H.G.	Please select
0.55	72.0	Contig19804_at	Contig19804	-	-	2e+0	At3g54040	photoassimilate-responsive protein-related	S.X.	H.G.	Please select
0.54	70.3	Contig5295_at	Contig5295	-	-	2e-113	At2g27210	kelch repeat-containing serine/threonine phosphoesterase family protein	S.X.	H.G.	Please select
0.53	69.7	Contig3848_at	Contig3848	-	-	7e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.44	58.9	Contig4414_at	Contig4414	-	-	5e-3	At2g03320	unknown protein	S.X.	H.G.	Please select
0.40	53.1	rbags22i06_at	rbags22i06	-	-	1e-3	At2g23140	binding / ubiquitin-protein ligase	S.X.	H.G.	Please select
0.40	53.1	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	S.X.	H.G.	Please select
0.36	47.1	Contig13687_at	Contig13687	-	-	4e+0	At5g12880	proline-rich family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.6	99.6	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.9	99.2	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.1	99.1	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.8	99.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.4	99.0	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.1	98.9	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.8	98.6	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1	98.4	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	Contig3927_s_at	Contig3927	-	-	4e-11	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig23683_at	Contig23683	-	-	5e-1	At4g00200	DNA binding	C.G.	S.X.	Please select
0.03	1e-1	36	Contig17873_at	Contig17873	-	-	4e-1	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	C.G.	S.X.	Please select
0.01	5e-1	34	Contig1521_at	Contig1521	-	-	6e-2	At2g31840	-	C.G.	S.X.	Please select
0.02	5e-1	34	Contig23292_at	Contig23292	-	-	2e+0	At3g44735	PSK1	C.G.	S.X.	Please select
0.01	5e-1	34	Contig8194_at	Contig8194	-	-	2e-7	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig4438_s_at	Contig4438	-	-	2e+0	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig9796_at	Contig9796	-	-	5e-2	At1g47970	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig9386_at	Contig9386	-	-	8e-17	At5g05980	ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-5	48	Arabidopsis thaliana	At5g67640	836900	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	HgAffx.13448.1.S1_at	CB374534	-	-	4e+0	At4g15960	catalytic/ epoxide hydrolase	C.G.	S.X.	Please select
0.09	3e-27	123	Oryza sativa	Os05g0141700	AK065644.1	-	Phosphoglycerate/bisphosphoglycerate mutase familyprotein	4e-8	At3g05170	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-1	36	Populus trichocarpa	PtpAffx.211707.1.S1_at	pmrna22944	hypothetical protein	-	8e-1	At2g42870	PAR1 (PHY RAPIDLY REGULATED 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	3e-106	385	Triticum aestivum	Ta.25476.1.S1_at	CD454009	-	-	4e-4	At5g67640	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1606551_at	CF211871	hypothetical protein LOC100255969	-	6e-30	At4g25660	unknown protein	C.G.	S.X.	Please select
0.07	2e-28	125	Zea mays	Zm.13814.1.S1_at	AY104654.1	hypothetical protein LOC100273186	-	1e-5	At1g08940	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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