Gene omics information

Query gene ID Contig13169_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7991.4Contig13169_atContig13169--2e-24At1g76860small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeS.X.H.G.
0.4458.9Contig6995_atContig6995--2e-8At5g57270unknown proteinS.X.H.G.
0.4458.9Contig11464_atContig11464--6e-20At1g55740AtSIP1 (Arabidopsis thaliana seed imbibition 1)S.X.H.G.
0.4458.9Contig9977_atContig9977--2e-2At5g49550unknown proteinS.X.H.G.
0.4458.9Contig4175_atContig4175--1e-19At3g07100protein transport protein Sec24, putativeS.X.H.G.
0.4255.2Contig5117_atContig5117--8e-2At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinS.X.H.G.
0.4255.2Contig7557_s_atContig7557--6e-18At5g17530phosphoglucosamine mutase family proteinS.X.H.G.
0.4053.1Contig5297_atContig5297--4e-16At1g64550ATGCN3S.X.H.G.
0.3950.5Contig6232_atContig6232--8e-1At2g01720ribophorin I family proteinS.X.H.G.
0.3950.5Contig16128_atContig16128--7e-15At5g23880CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.498.5GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
6.298.0GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
6.097.9GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.797.7GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seeds
5.497.5GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
5.497.5GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.997.1GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.897.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.696.8GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.596.7GSM146374Golden Promise shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.351e-57222Contig12133_atContig12133--4e-16At1g21190small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeC.G.S.X.
0.027e-134Contig13672_atContig13672--3e+0At3g14030-C.G.S.X.
0.027e-134Contig17100_atContig17100--2e+0At3g52800zinc finger (AN1-like) family proteinC.G.S.X.
0.017e-134Contig12400_atContig12400--3e+0At1g07950surfeit locus protein 5 family protein / SURF5 family proteinC.G.S.X.
0.017e-134Contig9183_atContig9183--3e-9At5g25770unknown proteinC.G.S.X.
0.023e+032Contig9685_atContig9685--2e-3At1g14990unknown proteinC.G.S.X.
0.013e+032Contig6659_s_atContig6659--5e-21At1g27980DPL1C.G.S.X.
0.013e+032Contig8435_atContig8435--1e+0At4g31580SRZ-22C.G.S.X.
0.023e+032Contig7195_atContig7195--5e-1At5g41210ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.312e-24113Arabidopsis thalianaAt1g76860844021small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:biological_process unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MAOFP---C.G.S.X.
0.211e-23111Glycine maxGma.12513.1.S1_atCD398913--1e-19At1g21190small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeC.G.S.X.
0.431e-88327Oryza sativaOs01g0866700AK099337.1-Sm-like protein1e-15At1g76860small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeC.G.S.X.
0.271e-35151Populus trichocarpaPtp.7758.1.S1_atCV254860hypothetical protein-4e-35At1g21190small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeC.G.S.X.
0.840773Triticum aestivumTa.14453.1.S1_atCD885636--2e-12At1g21190small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeC.G.S.X.
0.263e-39161Vitis vinifera1621248_atBQ796271hypothetical protein LOC100253870-4e-28At1g76860small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeC.G.S.X.
0.372e-84311Zea maysZm.3271.1.A1_atBU645176hypothetical protein AY106026 /// hypothetical protein LOC100194361-7e-15At1g76860small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage