Gene omics information

Query gene ID	Contig13168_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.44	58.9	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig25401_at	Contig25401	-	-	4e-3	At1g78710	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig23171_at	Contig23171	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	S.X.	H.G.	Please select
0.31	38.6	Contig11789_at	Contig11789	-	-	2e+0	At3g04620	nucleic acid binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.7	98.9	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.5	98.8	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	3e-72	272	Contig25804_at	Contig25804	-	-	8e-1	At4g02440	EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig10062_at	Contig10062	-	-	1e-1	At4g25570	ACYB-2	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7101_at	Contig7101	-	-	9e-1	At5g19485	transferase	C.G.	S.X.	Please select
0.02	1e+0	34	Contig11814_at	Contig11814	-	-	2e+0	At5g44300	dormancy/auxin associated family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig9175_at	Contig9175	-	-	2e-26	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig15522_at	Contig15522	-	-	4e+0	At5g43570	serine-type endopeptidase inhibitor	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11096_at	Contig11096	-	-	1e-2	At1g03770	RING1B (RING 1B)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig15653_at	Contig15653	-	-	1e-1	At3g62260	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.01	5e+0	32	Contig8475_at	Contig8475	-	-	3e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At5g50130	835078	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-2	40	Glycine max	Gma.12034.1.S1_at	CD406084	-	-	5e-1	At3g01530	AtMYB57 (myb domain protein 57)	C.G.	S.X.	Please select
0.57	6e-120	432	Oryza sativa	Os04g0652500	9632.m05433	-	Conserved hypothetical protein	3e+0	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-3	44	Populus trichocarpa	PtpAffx.819.1.A1_at	CV271302	hypothetical protein	-	8e-8	At1g18190	GC2 (golgin candidate 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.87	0	1209	Triticum aestivum	TaAffx.21552.1.S1_at	BG312718	-	-	1e-2	At2g24790	COL3 (CONSTANS-LIKE 3)	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1622851_at	CB345119	hypothetical protein LOC100243730	-	2e+0	At5g44860	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	ZmAffx.88.1.A1_at	AI665347	carnitine racemase/ catalytic	-	3e+0	At5g35375	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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