Gene omics information

Query gene ID	Contig13161_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig13161_at	Contig13161	-	-	8e-1	At5g51760	AHG1 (ABA-hypersensitive germination 1)	S.X.	H.G.	Please select
0.60	77.3	Contig22918_at	Contig22918	-	-	3e-1	At2g21140	ATPRP2 (PROLINE-RICH PROTEIN 2)	S.X.	H.G.	Please select
0.60	77.3	Contig17213_at	Contig17213	-	-	1e+0	At2g44110	MLO15 (MILDEW RESISTANCE LOCUS O 15)	S.X.	H.G.	Please select
0.53	69.7	Contig7590_at	Contig7590	-	-	7e-1	At1g55580	LAS (Lateral Suppressor)	S.X.	H.G.	Please select
0.36	47.1	Contig8882_at	Contig8882	-	-	4e-2	At3g59680	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.7	99.9	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
26.4	99.8	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
18.1	99.7	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
17.7	99.7	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
16.4	99.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
16.0	99.6	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
15.3	99.6	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
15.1	99.5	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
13.7	99.5	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
12.0	99.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	9e-33	141	Contig9099_at	Contig9099	-	-	3e-3	At4g26080	ABI1 (ABA INSENSITIVE 1)	C.G.	S.X.	Please select
0.03	3e-5	50	Contig18582_at	Contig18582	-	-	2e+0	At5g59220	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.01	4e-1	36	Contig2209_at	Contig2209	-	-	1e-1	At4g33730	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.02	4e-1	36	Contig2214_s_at	Contig2214	-	-	8e-2	At4g33730	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5376_at	Contig5376	-	-	3e+0	At3g44950	glycine-rich protein	C.G.	S.X.	Please select
0.02	2e+0	34	HB08H14r_at	HB08H14r	-	-	3e+0	At5g59590	UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig12099_at	Contig12099	-	-	7e+0	At5g48480	unknown protein	C.G.	S.X.	Please select
0.00	6e+0	32	Contig7937_s_at	Contig7937	-	-	1e-3	At5g11720	alpha-glucosidase 1 (AGLU1)	C.G.	S.X.	Please select
0.01	6e+0	32	Contig7936_at	Contig7936	-	-	1e-14	At4g38320	HHP5 (heptahelical protein 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	36	Arabidopsis thaliana	At5g51760	835250	AHG1 (ABA-hypersensitive germination 1)	Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	5e-3	44	Glycine max	Gma.3904.1.S1_at	BE822721	-	-	4e-8	At1g72770	HAB1 (HOMOLOGY TO ABI1)	C.G.	S.X.	Please select
0.22	9e-30	133	Oryza sativa	Os05g0537400	CF304349	-	Protein phosphatase 2C	1e-2	At5g10740	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e-14	79	Populus trichocarpa	PtpAffx.15749.1.S1_at	CV244897	-	-	6e-7	At5g57050	ABI2 (ABA INSENSITIVE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	0	950	Triticum aestivum	Ta.12348.1.A1_at	BQ172159	-	-	1e-1	At2g29380	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	2e-5	50	Vitis vinifera	1621497_at	CB971307	hypothetical protein LOC100242262	-	2e-3	At1g72770	HAB1 (HOMOLOGY TO ABI1)	C.G.	S.X.	Please select
0.10	1e-7	57	Zea mays	Zm.8678.1.A1_at	BM075157	protein phosphatase 2C ABI2	-	1e-3	At1g72770	HAB1 (HOMOLOGY TO ABI1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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