Gene omics information

Query gene ID	Contig13131_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig13131_at	Contig13131	-	-	6e-1	At5g15610	proteasome family protein	S.X.	H.G.	Please select
0.83	94.0	Contig662_at	Contig662	-	-	1e-1	At5g22240	OFP10	S.X.	H.G.	Please select
0.57	74.9	Contig11455_at	Contig11455	-	-	1e-2	At3g18165	MOS4 (Modifier of snc1,4)	S.X.	H.G.	Please select
0.55	72.0	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	S.X.	H.G.	Please select
0.43	56.4	Contig6527_at	Contig6527	-	-	8e-1	At3g07350	unknown protein	S.X.	H.G.	Please select
0.25	28.9	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.0	99.3	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.7	98.3	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9	97.9	GSM310867	lina_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.8	97.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.6	96.8	GSM310866	lina_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.4	96.6	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM310455	lina_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-2	38	Contig599_at	Contig599	-	-	1e-6	At5g60390	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.03	3e-1	36	Contig14924_s_at	Contig14924	-	-	8e-1	At1g66560	WRKY64	C.G.	S.X.	Please select
0.02	1e+0	34	HVSMEf0014C12r2_s_at	HVSMEf0014C12r2	-	-	1e+1	At5g03840	TFL1 (TERMINAL FLOWER 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8273_at	Contig8273	-	-	2e+0	At5g03170	FLA11	C.G.	S.X.	Please select
0.01	1e+0	34	Contig6027_at	Contig6027	-	-	2e-5	At2g31890	RAP	C.G.	S.X.	Please select
0.02	1e+0	34	Contig2358_at	Contig2358	-	-	5e-1	At3g54380	SAC3/GANP family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig9978_at	Contig9978	-	-	6e-7	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.02	1e+0	34	HVSMEf0014C12r2_at	HVSMEf0014C12r2	-	-	1e+1	At5g03840	TFL1 (TERMINAL FLOWER 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig12998_at	Contig12998	-	-	8e+0	At5g46730	glycine-rich protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At5g15610	831413	proteasome family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.psZS001xL01f_at	PsAffx.psZS001xL01f	-	-	1e+0	At4g15920	-	C.G.	S.X.	Please select
0.39	6e-166	585	Oryza sativa	Os03g0336000	AK100067.1	-	TPR-like domain containing protein	5e+0	At5g23680	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e-2	40	Populus trichocarpa	PtpAffx.215096.1.S1_at	pmrna29072	hypothetical protein	-	4e+0	At5g67500	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e-1	38	Triticum aestivum	TaAffx.65155.1.S1_at	CA688169	-	-	2e-1	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1618465_at	CB918507	hypothetical protein LOC100252099	-	2e-39	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	C.G.	S.X.	Please select
0.02	2e-2	40	Zea mays	Zm.7609.1.A1_at	BM079175	-	-	3e-1	At5g17523	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage