CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig13099_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig13099_at Contig13099 - - 1e+0 At5g52130 unknown protein S.X. H.G.
0.77 90.8 L32165_s_at L32165 - - 0 At5g42020 BIP2 S.X. H.G.
0.73 88.7 Contig7283_at Contig7283 - - 5e-8 At2g26760 CYCB1 S.X. H.G.
0.73 88.7 Contig16153_at Contig16153 - - 1e+0 At1g27760 interferon-related developmental regulator family protein / IFRD protein family S.X. H.G.
0.67 84.7 Contig50_x_at Contig50 - - 3e+0 At5g44610 MAP18 (Microtubule-associated Protein 18) S.X. H.G.
0.36 47.1 Contig12156_at Contig12156 - - 4e-1 At2g02650 reverse transcriptase-related S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.7 98.9 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.6 98.8 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
7.7 98.6 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
5.9 97.9 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
5.2 97.4 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1 97.3 GSM146361 Golden Promise Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0 97.2 GSM146366 Maythorpe Root Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8 97.0 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7 96.9 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
4.7 96.9 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-11 67 Contig13098_at Contig13098 - - 6e+0 At4g03580 - C.G. S.X.
0.07 1e-1 36 HVSMEa0007F09r2_at HVSMEa0007F09r2 - - 9e-1 At4g31060 AP2 domain-containing transcription factor, putative C.G. S.X.
0.01 5e-1 34 Contig8164_at Contig8164 - - 2e-11 At4g10730 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.02 5e-1 34 Contig6321_at Contig6321 - - 4e-11 At4g21450 vesicle-associated membrane family protein / VAMP family protein C.G. S.X.
0.01 2e+0 32 Contig8480_at Contig8480 - - 1e-21 At5g03540 ATEXO70A1 (exocyst subunit EXO70 family protein A1) C.G. S.X.
0.03 2e+0 32 Contig25811_at Contig25811 - - 8e-2 At2g15770 glycine-rich protein C.G. S.X.
0.03 8e+0 30 HX04E17u_at HX04E17u - - 1e+0 At5g12340 unknown protein C.G. S.X.
0.03 8e+0 30 HV06J15u_at HV06J15u - - 5e+0 At5g05110 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.03 8e+0 30 HW08B15u_at HW08B15u - - 3e+0 At4g18390 TCP family transcription factor, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At5g52130 835289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.02 6e+0 32 Glycine max PsAffx.C168000018_at PsAffx.C168000018 - - 3e+0 At5g25475 DNA binding C.G. S.X.
0.03 1e-1 38 Oryza sativa Os04g0603800 AK063616.1 - Hypothetical protein 2e+0 At5g65030 unknown protein C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.223427.1.S1_at pmrna41430 - - 1e+0 At5g47170 unknown protein C.G. S.X.
0.30 2e-60 232 Triticum aestivum Ta.15800.1.S1_at CA486986 s-locus protein 5 - 7e-11 At1g79030 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative C.G. S.X.
0.03 8e-2 36 Vitis vinifera 1617752_at CF207692 hypothetical protein LOC100259548 - 4e+0 At5g44973 - C.G. S.X.
0.04 2e+0 32 Zea mays Zm.15266.2.A1_at BM351667 hypothetical protein LOC100272252 - 2e-1 At4g16880 disease resistance protein-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage