Gene omics information

Query gene ID	Contig13065_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig13065_at	Contig13065	-	-	1e-4	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	S.X.	H.G.	Please select
0.80	92.5	Contig2592_at	Contig2592	-	-	1e-17	At5g10860	CBS domain-containing protein	S.X.	H.G.	Please select
0.71	87.1	Contig16209_at	Contig16209	-	-	2e+0	At5g55570	unknown protein	S.X.	H.G.	Please select
0.63	80.3	EBpi01_SQ002_O17_at	EBpi01_SQ002_O17	-	-	8e-1	At1g07880	ATMPK13	S.X.	H.G.	Please select
0.61	78.7	Contig1474_at	Contig1474	-	-	1e-41	At1g09690	60S ribosomal protein L21 (RPL21C)	S.X.	H.G.	Please select
0.52	68.3	EBem10_SQ002_A16_at	EBem10_SQ002_A16	-	-	5e+0	At5g23260	TT16 (TRANSPARENT TESTA16)	S.X.	H.G.	Please select
0.50	66.9	Contig2052_s_at	Contig2052	-	-	3e+0	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	S.X.	H.G.	Please select
0.33	42.6	HVSMEi0012N18r2_at	HVSMEi0012N18r2	-	-	1e+1	At5g18310	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.7	99.9	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
32.2	99.9	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
31.8	99.9	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
21.2	99.7	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
20.9	99.7	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
17.6	99.6	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
17.3	99.6	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.4	99.6	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.8	99.5	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.9	99.5	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	862	Contig9172_at	Contig9172	-	-	4e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.75	0	862	Contig9172_s_at	Contig9172	-	-	4e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.39	9e-16	83	Contig10847_at	Contig10847	-	-	2e-9	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.07	3e-3	42	Contig17901_at	Contig17901	-	-	6e+0	At4g10300	-	C.G.	S.X.	Please select
0.03	3e-3	42	Contig2768_s_at	Contig2768	-	-	2e+0	At4g30050	unknown protein	C.G.	S.X.	Please select
0.07	3e-3	42	Contig10860_at	Contig10860	-	-	1e+0	At5g49860	jacalin lectin family protein	C.G.	S.X.	Please select
0.12	3e-3	42	Contig3017_at	Contig3017	oxalate oxidase	-	2e+0	At1g18970	GLP4 (GERMIN-LIKE PROTEIN 4)	C.G.	S.X.	Please select
0.03	1e-2	40	Contig11930_at	Contig11930	-	-	4e-1	At3g57900	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig8424_at	Contig8424	-	-	2e-3	At1g76220	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-4	48	Arabidopsis thaliana	At1g02335	3766642	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	F:manganese ion binding, nutrient reservoir activity;P:unknown;C:endomembrane system, apoplast;PBFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	Gma.13380.1.A1_s_at	CD403842	-	-	3e+0	At1g62060	unknown protein	C.G.	S.X.	Please select
0.57	4e-169	595	Oryza sativa	Os01g0284500	AF032974.1	-	Nectarin 1 precursor (EC 1.15.1.1) (Superoxidedismutase [Mn])	7e-3	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.95228.1.A1_at	CV255738	peptide deformylase	-	3e-29	At1g15390	PDF1A (PEPTIDE DEFORMYLASE 1A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.83	0	1031	Triticum aestivum	Ta.27008.1.S1_at	CD490455	-	-	3e-2	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1613647_at	CF212302	germin-like protein 2	-	2e-9	At1g09560	GLP5 (GERMIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.48	7e-115	412	Zea mays	Zm.6671.3.S1_at	CO519752	hypothetical protein LOC100273935	-	2e-3	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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