Gene omics information

Query gene ID Contig13038_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4458.9Contig13038_atContig13038--3e-4At3g54640TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)S.X.H.G.
0.5066.9HY03N19u_s_atHY03N19u--2e+0At5g06950AHBP-1BS.X.H.G.
0.2835.5HY08N20u_atHY08N20u--9e-1At5g37380DNAJ heat shock N-terminal domain-containing proteinS.X.H.G.
0.2021.1Contig2960_atContig2960--2e+0At4g31290ChaC-like family proteinS.X.H.G.
0.1818.2Contig9615_atContig9615--1e+0At1g35880-S.X.H.G.
0.1615.3Contig7492_s_atContig7492--4e-16At3g14790RHM3 (RHAMNOSE BIOSYNTHESIS 3)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.399.1GSM419978Awn_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spike
10.399.1GSM440969Control awn_Rep1GSE17669Gene expression in the barley spike during drought stress
7.498.5GSM372943genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.398.5GSM419980Awn_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spike
7.398.5GSM440971Control awn_Rep3GSE17669Gene expression in the barley spike during drought stress
6.998.3GSM372959genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.498.1GSM372961genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.198.0GSM398279Moroc9-75_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.797.7GSM372956genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.797.7GSM398249Martin_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.484e-39161Contig20987_atContig20987--1e-3At4g02610tryptophan synthase, alpha subunit, putativeC.G.S.X.
0.381e-35149Contig23347_atContig23347--9e-8At3g54640TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)C.G.S.X.
0.141e-1789Contig5542_atContig5542--6e-4At3g54640TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)C.G.S.X.
0.014e-238Contig6338_atContig6338--3e-1At5g10890myosin heavy chain-relatedC.G.S.X.
0.014e-238Contig2985_s_atContig2985--9e-43At5g13630GUN5 (GENOMES UNCOUPLED 5)C.G.S.X.
0.012e-136Contig11791_atContig11791--4e+0At5g47090unknown proteinC.G.S.X.
0.032e-136Contig25774_atContig25774--4e+0At1g49435LCR16 (Low-molecular-weight cysteine-rich 16)C.G.S.X.
0.022e-136Contig9207_atContig9207--8e-7At5g10740protein phosphatase 2C-related / PP2C-relatedC.G.S.X.
0.022e-136Contig7686_atContig7686--2e-1At1g60650glycine-rich RNA-binding protein, putativeC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.053e-446Arabidopsis thalianaAt3g54640824629TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).---C.G.S.X.
0.035e-136Glycine maxPsAffx.psZS007xG16f_atPsAffx.psZS007xG16f--1e+0At1g71780unknown proteinC.G.S.X.
0.351e-48194Oryza sativaOs03g0797400AK072595.1-Tryptophan synthase, alpha chain domain containingprotein4e-2At5g66090unknown proteinC.G.S.X.
0.102e+034Populus trichocarpaPtp.415.1.A1_atCK088975hypothetical protein-1e-18At4g02610tryptophan synthase, alpha subunit, putativeC.G.S.X.
0.444e-50198Triticum aestivumTa.29424.1.A1_a_atCK205869--3e-1At4g02610tryptophan synthase, alpha subunit, putativeC.G.S.X.
0.042e+032Vitis vinifera1615498_atCD010850--3e+0At5g26170WRKY50C.G.S.X.
0.201e-550Zea maysZm.283.1.S1_atAY254104.1benzoxazinless1-5e-2At4g01220-C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage