Gene omics information

Query gene ID	Contig13036_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig13036_at	Contig13036	-	-	6e-1	At3g57000	nucleolar essential protein-related	S.X.	H.G.	Please select
0.57	74.9	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.55	72.0	Contig25651_at	Contig25651	-	-	5e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.43	56.4	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.40	53.1	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	S.X.	H.G.	Please select
0.38	49.5	Contig12656_s_at	Contig12656	-	-	8e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.5	99.6	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.7	99.5	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.5	99.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.2	99.2	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.2	99.2	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.0	98.7	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.7	98.6	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.5	98.6	GSM398265	HS41-1_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.2	98.5	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.0	98.4	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-5	50	Contig7429_s_at	Contig7429	-	-	5e-8	At2g18162	CPuORF1 (Conserved peptide upstream open reading frame 1)	C.G.	S.X.	Please select
0.04	5e-3	42	Contig14253_at	Contig14253	-	-	2e+0	At5g50800	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.03	5e-3	42	Contig19576_x_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	C.G.	S.X.	Please select
0.03	5e-3	42	Contig19576_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	C.G.	S.X.	Please select
0.02	5e-3	42	Contig10409_s_at	Contig10409	-	-	2e+0	At1g54200	unknown protein	C.G.	S.X.	Please select
0.02	5e-3	42	Contig10409_at	Contig10409	-	-	2e+0	At1g54200	unknown protein	C.G.	S.X.	Please select
0.01	2e-2	40	Contig3414_s_at	Contig3414	-	-	1e+0	At4g32900	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select
0.02	2e-2	40	Contig19636_at	Contig19636	-	-	2e+0	At3g57540	remorin family protein	C.G.	S.X.	Please select
0.02	8e-2	38	Contig3058_at	Contig3058	-	-	2e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At3g57000	824867	nucleolar essential protein-related	F:molecular_function unknown;P:unknown;C:nucleus;MOFAPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	GmaAffx.86084.1.S1_at	AW317958	-	-	1e-2	At1g65020	-	C.G.	S.X.	Please select
0.16	3e-7	57	Oryza sativa	Os.52093.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	9e-1	36	Populus trichocarpa	PtpAffx.18095.1.A1_at	CV261283	-	-	4e+0	At5g41270	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e-2	42	Triticum aestivum	TaAffx.80196.1.S1_at	CK212052	-	-	3e+0	At5g50915	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	3e-3	42	Vitis vinifera	1620366_at	CB006256	hypothetical protein LOC100242551	-	5e+0	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.02	7e-2	38	Zea mays	Zm.9899.1.A1_at	BM347871	-	-	4e+0	At4g29470	phospholipase A2, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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