CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig12988_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.5 Contig12988_at Contig12988 - - 5e-1 At5g55970 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.83 94.0 HM04K08u_s_at HM04K08u - - 9e-1 At1g65000 unknown protein S.X. H.G.
0.83 94.0 Contig18923_at Contig18923 - - 2e+0 At3g47130 F-box family protein-related S.X. H.G.
0.83 94.0 Contig18390_at Contig18390 - - 4e+0 At1g53110 - S.X. H.G.
0.67 84.7 Contig16483_at Contig16483 - - 8e-3 At4g39640 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) S.X. H.G.
0.50 66.9 Contig17917_at Contig17917 - - 5e+0 At5g10140 FLC (FLOWERING LOCUS C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.2 99.2 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
10.9 99.2 GSM261054 Bonus Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.9 99.2 GSM160826 19% SWC rep3 GSE6990 Barley drought stress
10.6 99.2 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.4 99.2 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
9.4 99.0 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.2 99.0 GSM261055 Bonus Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.9 98.9 GSM146380 Maythorpe shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.7 98.6 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.6 98.6 GSM160823 19% SWC rep1 GSE6990 Barley drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.92 0 908 Contig12989_x_at Contig12989 - - 5e-1 At5g55970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.92 0 908 Contig12989_at Contig12989 - - 5e-1 At5g55970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.35 1e-120 432 HVSMEg0010K10r2_at HVSMEg0010K10r2 - - 9e-1 At5g52200 unknown protein C.G. S.X.
0.30 2e-110 398 HVSMEm0007M05r2_s_at HVSMEm0007M05r2 - - 8e-2 At5g55970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.27 2e-109 395 Contig5171_at Contig5171 - - 1e-1 At5g55970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.34 1e-108 393 HK03P05r_at HK03P05r - - 4e-3 At2g35860 FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR) C.G. S.X.
0.33 1e-108 393 EBro07_SQ002_K15_x_at EBro07_SQ002_K15 - - 6e-2 At5g26717 - C.G. S.X.
0.26 4e-108 391 Contig1497_s_at Contig1497 - - 1e-1 At3g20360 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.22 4e-108 391 Contig13209_at Contig13209 - - 6e-1 At4g39070 zinc finger (B-box type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At5g55970 835695 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFV - - - C.G. S.X.
0.03 7e-1 36 Glycine max GmaAffx.52566.1.S1_at AI959822 - - 2e-4 At3g08950 electron transport SCO1/SenC family protein C.G. S.X.
0.10 4e-28 127 Oryza sativa Os06g0106100 AK112060.1 - Cwf15/Cwc15 cell cycle control protein familyprotein 6e-10 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.15197.1.S1_at CX181414 hypothetical protein - 1e-3 At4g25225 unknown protein C.G. S.X.
0.13 1e-20 101 Triticum aestivum TaAffx.58389.1.S1_at CA620022 - - 1e+0 At5g17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1620592_at CF515947 - - 1e+0 At5g41450 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.10 4e-21 101 Zea mays Zm.2245.1.A1_at CF625725 pre-mRNA-splicing factor cwc15 - 6e-7 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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