Gene omics information

Query gene ID	Contig12986_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.83	94.0	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	S.X.	H.G.	Please select
0.67	84.7	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.61	78.7	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	S.X.	H.G.	Please select
0.56	74.3	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	S.X.	H.G.	Please select
0.50	66.9	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
117.0	100.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
109.0	100.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
93.8	100.0	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
33.6	99.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
29.0	99.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.6	99.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
0.0	29.9	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
0.0	29.9	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
0.0	29.9	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
0.0	29.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	6e-21	101	EBan01_SQ005_I10_at	EBan01_SQ005_I10	-	-	4e+0	At5g65210	TGA1	C.G.	S.X.	Please select
0.17	3e-16	85	Contig3401_at	Contig3401	-	-	7e-1	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	C.G.	S.X.	Please select
0.03	3e-10	65	Contig2133_x_at	Contig2133	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.03	3e-10	65	Contig2133_s_at	Contig2133	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.03	3e-10	65	Contig2134_at	Contig2134	-	-	7e-4	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.08	2e-8	59	Contig8208_at	Contig8208	-	-	2e-7	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.08	2e-8	59	Contig12623_at	Contig12623	-	-	6e-7	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.04	1e-6	54	rbags1d02_at	rbags1d02	-	-	2e-2	At3g28007	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig16584_at	Contig16584	-	-	2e+0	At5g26220	ChaC-like family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	7e-13	75	Arabidopsis thaliana	At3g28007	822424	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.psMC007xF10f_s_at	PsAffx.psMC007xF10f	-	-	3e+0	At4g08260	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.43	1e-62	242	Oryza sativa	Os01g0605700	AK099440.1	-	MtN3 and saliva related transmembrane proteinfamily protein	3e-5	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-5	52	Populus trichocarpa	PtpAffx.203313.1.S1_at	pmrna6584	hypothetical protein	-	9e-8	At1g66770	nodulin MtN3 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.84	0	1195	Triticum aestivum	Ta.23687.1.S1_at	BQ170771	-	-	2e-13	At3g28007	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.03	1e-2	40	Vitis vinifera	1607725_at	CF207847	hypothetical protein LOC100247121	-	3e-18	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.37	9e-69	260	Zea mays	Zm.1886.1.S1_at	CF602712	seven-transmembrane-domain protein 1	-	6e-1	At1g78815	LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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