Gene omics information

Query gene ID	Contig12940_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig12940_at	Contig12940	-	-	1e+0	At5g60490	FLA12	S.X.	H.G.	Please select
0.35	45.1	HVSMEh0094D08f_at	HVSMEh0094D08f	-	-	8e-1	At1g12320	unknown protein	S.X.	H.G.	Please select
0.33	42.6	HW06N09u_x_at	HW06N09u	-	-	3e+0	At4g14805	protease inhibitor/seed storage/lipid transfer protein (LTP)-related	S.X.	H.G.	Please select
0.31	38.6	HD07C21r_x_at	HD07C21r	-	-	4e-6	At2g36530	LOS2	S.X.	H.G.	Please select
0.24	27.2	HT09J20u_x_at	HT09J20u	-	-	2e+1	At5g54410	unknown protein	S.X.	H.G.	Please select
0.15	14.1	HW06P12u_x_at	HW06P12u	-	-	7e-2	At4g13870	WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE)	S.X.	H.G.	Please select
0.14	12.9	HVSMEc0008G05r2_at	HVSMEc0008G05r2	-	-	4e+0	At4g02000	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.0	99.4	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.5	99.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
10.2	99.1	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.0	98.7	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.9	98.7	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.9	98.7	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.8	98.6	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.8	98.6	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4	98.5	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-11	69	HP01H17w_at	HP01H17w	-	-	3e-1	At4g09270	unknown protein	C.G.	S.X.	Please select
0.13	4e-5	48	Contig18390_at	Contig18390	-	-	4e+0	At1g53110	-	C.G.	S.X.	Please select
0.08	6e-4	44	Contig4317_at	Contig4317	-	-	2e-1	At1g36060	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.02	3e-3	42	Contig6924_at	Contig6924	-	-	4e-8	At2g45010	unknown protein	C.G.	S.X.	Please select
0.02	3e-3	42	Contig11134_at	Contig11134	-	-	5e-1	At5g49210	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	Contig3959_at	Contig3959	-	-	3e-2	At1g36030	F-box family protein	C.G.	S.X.	Please select
0.01	1e-2	40	Contig1471_at	Contig1471	-	-	2e-76	At4g30600	signal recognition particle receptor alpha subunit family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig10466_at	Contig10466	glycosyltransferase	-	1e+1	At4g31020	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig5703_at	Contig5703	beta-D-xylosidase	-	5e+0	At1g78060	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At5g60490	836170	FLA12	F:unknown;P:unknown;C:plasma membrane, anchored to membrane;PBOMAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-3	42	Glycine max	Gma.7542.1.S1_at	CD402549	-	-	3e-56	At1g32210	ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)	C.G.	S.X.	Please select
0.26	4e-42	173	Oryza sativa	Os02g0752800	AK105877.1	-	Dehydration responsive element binding protein 2B(DREB2B protein)	7e-5	At2g22200	AP2 domain-containing transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.35150.1.S1_at	DN502522	-	-	6e-2	At1g26650	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	4e-121	434	Triticum aestivum	Ta.5585.1.A1_x_at	BQ619590	-	-	6e+0	At3g16570	RALFL23 (ralf-like 23)	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1622318_at	CF516494	similar to putative anti-virus transcriptional factor	-	5e-3	At3g48070	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.43	3e-36	151	Zea mays	Zm.18481.1.A1_at	CO525607	-	-	2e+1	At5g55570	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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