Gene omics information

Query gene ID	Contig12938_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig12938_at	Contig12938	-	-	1e+0	At1g36920	unknown protein	S.X.	H.G.	Please select
0.57	74.9	HVSMEa0009I06r2_at	HVSMEa0009I06r2	-	-	9e+0	At5g59060	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig5081_at	Contig5081	-	-	5e-7	At2g42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	S.X.	H.G.	Please select
0.40	53.1	Contig13002_at	Contig13002	-	-	2e-10	At1g45150	unknown protein	S.X.	H.G.	Please select
0.37	47.9	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	S.X.	H.G.	Please select
0.37	47.9	Contig5644_at	Contig5644	-	-	3e-114	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	S.X.	H.G.	Please select
0.33	42.6	Contig10064_at	Contig10064	-	-	2e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	97.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	1e-162	571	HV05F02u_s_at	HV05F02u	-	-	9e-1	At1g36920	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig7004_at	Contig7004	-	-	2e+0	At4g21320	HSA32 (HEAT-STRESS-ASSOCIATED 32)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig7003_at	Contig7003	-	-	5e-1	At3g13800	metallo-beta-lactamase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig18967_at	Contig18967	-	-	7e-25	At3g03940	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	HM04D17r_at	HM04D17r	-	-	1e+0	At4g05553	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	HV14B16u_x_at	HV14B16u	-	-	3e-1	At5g59290	UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5284_at	Contig5284	-	-	2e-82	At5g22780	adaptin family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig3113_at	Contig3113	-	-	9e+0	Atcg01310	-	C.G.	S.X.	Please select
0.01	9e+0	30	Contig4491_s_at	Contig4491	-	-	7e-1	At5g45410	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g36920	840600	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.7536.1.S1_at	CB826254	-	-	4e+0	At4g31300	PBA1	C.G.	S.X.	Please select
0.12	2e-16	87	Oryza sativa	Os07g0546100	AK100024.1	-	Conserved hypothetical protein	2e-2	At1g11480	eukaryotic translation initiation factor-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.220063.1.S1_at	pmrna36349	hypothetical protein	-	3e-10	At5g16770	AtMYB9 (myb domain protein 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	0	668	Triticum aestivum	Ta.6924.1.S1_at	BQ744409	-	-	8e-1	At2g47610	60S ribosomal protein L7A (RPL7aA)	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1606695_at	CF403712	hypothetical protein LOC100247470	-	1e+0	At4g23770	unknown protein	C.G.	S.X.	Please select
0.17	1e-7	56	Zea mays	Zm.17230.1.A1_at	CK144818	-	-	8e+0	At4g08895	inorganic phosphate transporter family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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