Gene omics information

Query gene ID	Contig12888_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig12888_at	Contig12888	-	-	3e-2	At3g24200	FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	S.X.	H.G.	Please select
0.61	78.7	Contig12888_s_at	Contig12888	-	-	3e-2	At3g24200	FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	S.X.	H.G.	Please select
0.30	37.0	Contig13112_at	Contig13112	-	-	1e-8	At3g01370	ATCFM2 (CRM FAMILY MEMBER 2)	S.X.	H.G.	Please select
0.29	35.5	Contig15085_at	Contig15085	-	-	6e+0	At5g18540	unknown protein	S.X.	H.G.	Please select
0.05	4.1	Contig24931_at	Contig24931	-	-	2e-9	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	S.X.	H.G.	Please select
0.03	2.6	Contig9621_s_at	Contig9621	-	-	1e+0	At2g44581	protein binding / zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.9	99.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.5	98.8	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.1	98.0	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
5.5	97.6	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1990	Contig12888_s_at	Contig12888	-	-	3e-2	At3g24200	FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	C.G.	S.X.	Please select
0.02	1e+0	34	Contig16386_at	Contig16386	-	-	2e+0	At5g14330	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig233_at	Contig233	-	-	2e-63	At1g50480	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)	C.G.	S.X.	Please select
0.03	4e+0	32	rbags15b24_s_at	rbags15b24	-	-	2e+0	At2g41650	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig10100_at	Contig10100	-	-	6e-17	At4g21660	proline-rich spliceosome-associated (PSP) family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig5417_at	Contig5417	-	-	4e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig11232_at	Contig11232	-	-	1e-4	At3g26790	FUS3 (FUSCA 3)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig600_at	Contig600	-	-	1e-12	At3g10410	scpl49 (serine carboxypeptidase-like 49)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig8838_at	Contig8838	-	-	8e-3	At5g50100	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-2	40	Arabidopsis thaliana	At3g24200	822006	FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	F:oxidoreductase activity, monooxygenase activity, FAD binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;P:ubiquinone biosynthetic process, metabolic process;C:unknown;BOFMPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.92335.1.A1_s_at	CF808060	-	-	3e-1	At5g20700	senescence-associated protein-related	C.G.	S.X.	Please select
0.42	0	658	Oryza sativa	Os.56320.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	5e-8	59	Populus trichocarpa	Ptp.5217.1.S1_at	CV245754	hypothetical protein	-	2e-12	At3g24200	FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	0	690	Triticum aestivum	Ta.3321.2.A1_x_at	BQ162509	-	-	3e-8	At3g24200	FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	C.G.	S.X.	Please select
0.02	9e+0	30	Vitis vinifera	1622619_at	BQ799372	hypothetical protein LOC100252967	-	4e-7	At3g60210	chloroplast chaperonin 10, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	ZmAffx.369.1.S1_at	AI673865	Adenosine 5'-phosphosulfate reductase 3	-	2e-1	At3g44710	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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