CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig12867_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 Contig12867_at Contig12867 - - 9e-41 At1g34430 EMB3003 (embryo defective 3003) S.X. H.G.
0.57 74.9 Contig5710_at Contig5710 - - 6e-7 At4g36910 LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) S.X. H.G.
0.55 72.0 rbags1d23_s_at rbags1d23 - - 1e+1 At5g50000 protein kinase, putative S.X. H.G.
0.50 66.9 Contig7556_s_at Contig7556 - - 5e-1 At1g21326 VQ motif-containing protein S.X. H.G.
0.50 66.9 Contig680_at Contig680 - - 1e-99 At4g30190 AHA2 S.X. H.G.
0.33 42.6 Contig10899_at Contig10899 - - 3e+0 At3g63530 BB (BIG BROTHER) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 98.6 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4 98.5 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4 98.5 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4 98.5 GSM146372 Golden Promise shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.2 98.5 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.1 98.4 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.4 98.1 GSM146378 Maythorpe shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.2 98.0 GSM146370 Golden Promise shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.2 98.0 GSM146374 Golden Promise shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6 97.7 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-55 216 Contig6806_at Contig6806 - - 2e-17 At3g25860 LTA2 C.G. S.X.
0.08 3e-5 50 HV_CEa0002N08r2_at HV_CEa0002N08r2 - - 6e-24 At3g25860 LTA2 C.G. S.X.
0.02 6e-3 42 Contig14199_at Contig14199 - - 8e-6 At3g53450 unknown protein C.G. S.X.
0.02 6e-3 42 Contig4457_at Contig4457 - - 1e-1 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.02 6e-3 42 Contig15316_at Contig15316 - - 4e-1 At1g45050 ATUBC2-1 C.G. S.X.
0.02 6e-3 42 Contig11133_at Contig11133 - - 4e-1 At4g29480 mitochondrial ATP synthase g subunit family protein C.G. S.X.
0.01 3e-2 40 Contig6935_at Contig6935 - - 2e-5 At5g27540 MIRO1 (Miro-related GTP-ase 1) C.G. S.X.
0.02 3e-2 40 HVSMEn0015O13r2_at HVSMEn0015O13r2 - - 1e+0 At4g29470 phospholipase A2, putative C.G. S.X.
0.02 3e-2 40 Contig19599_at Contig19599 - - 6e-3 At2g39320 OTU-like cysteine protease family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 9e-41 169 Arabidopsis thaliana At1g34430 840346 EMB3003 (embryo defective 3003) F:dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity;P:embryonic development ending in seed dormancy;C:cytosolic ribosome, plasma membrane, chloroplast, chloroplast envelope;OBMFPA - - - C.G. S.X.
0.37 1e-58 228 Glycine max Gma.6881.1.S1_at CD408714 - - 1e-75 At1g34430 EMB3003 (embryo defective 3003) C.G. S.X.
0.57 0 706 Oryza sativa Os12g0182200 AK099737.1 - Dihydrolipoamide S-acetyltransferase(AT3g25860/MPE11_1) 3e-13 At1g34430 EMB3003 (embryo defective 3003) C.G. S.X.
0.33 2e-60 234 Populus trichocarpa PtpAffx.221288.1.S1_s_at pmrna38067 hypothetical protein - 2e-115 At1g34430 EMB3003 (embryo defective 3003) C.G. S.X.
0.58 0 1298 Triticum aestivum Ta.1277.1.A1_at CK196131 - - 1e-30 At1g34430 EMB3003 (embryo defective 3003) C.G. S.X.
0.06 1e-9 63 Vitis vinifera 1622406_at CB343386 similar to LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE); dihydrolipoyllysine-residue acetyltransferase - 5e-47 At3g25860 LTA2 C.G. S.X.
0.56 1e-127 456 Zea mays Zm.58.1.S1_at U16254.1 dihydrolipoamide acetyl transferase - 5e-27 At1g34430 EMB3003 (embryo defective 3003) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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