Gene omics information

Query gene ID	Contig12816_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	98.4	Contig12816_at	Contig12816	-	-	1e-4	At4g08455	BTB/POZ domain-containing protein	S.X.	H.G.	Please select
0.46	61.0	Contig1660_at	Contig1660	-	-	6e-27	At4g15415	ATB' GAMMA	S.X.	H.G.	Please select
0.42	55.2	Contig12767_at	Contig12767	-	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	S.X.	H.G.	Please select
0.36	47.1	Contig16156_s_at	Contig16156	-	-	1e-4	At1g71010	phosphatidylinositol-4-phosphate 5-kinase family protein	S.X.	H.G.	Please select
0.28	35.5	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	S.X.	H.G.	Please select
0.23	26.1	Contig11143_at	Contig11143	-	-	3e+0	At4g14810	unknown protein	S.X.	H.G.	Please select
0.18	18.2	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.8	99.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.3	98.1	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	7e-1	34	Contig7913_at	Contig7913	-	-	1e-21	At1g08550	NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1)	C.G.	S.X.	Please select
0.02	7e-1	34	Contig13519_at	Contig13519	-	-	7e-1	At3g14750	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig8862_at	Contig8862	-	-	4e+0	At3g21730	dihydroneopterin aldolase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig19722_at	Contig19722	-	-	3e-2	At2g37210	-	C.G.	S.X.	Please select
0.02	3e+0	32	Contig16870_at	Contig16870	-	-	5e-11	At2g36570	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Contig5180_at	Contig5180	-	-	4e-66	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	C.G.	S.X.	Please select
0.01	3e+0	32	Contig5030_at	Contig5030	-	-	4e-33	At2g30390	FC2 (FERROCHELATASE 2)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig1942_at	Contig1942	-	-	2e-1	At5g15520	40S ribosomal protein S19 (RPS19B)	C.G.	S.X.	Please select
0.01	1e+1	30	Contig8498_at	Contig8498	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-4	48	Arabidopsis thaliana	At4g08455	826404	BTB/POZ domain-containing protein	F:protein binding;P:unknown;C:unknown;MPOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-3	44	Glycine max	GmaAffx.54945.1.S1_at	BI786004	-	-	4e-9	At4g08455	BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.37	2e-90	333	Oryza sativa	Os07g0258700	AK069407.1	-	BTB/POZ domain containing protein	2e-4	At4g08455	BTB/POZ domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	1e-4	48	Populus trichocarpa	PtpAffx.201838.1.S1_at	pmrna3660	hypothetical protein	-	1e-29	At4g08455	BTB/POZ domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	40	Triticum aestivum	TaAffx.99212.1.S1_at	CA719402	-	-	7e-8	At4g08455	BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.06	5e-7	54	Vitis vinifera	1616034_at	CA817525	similar to BTB/POZ domain-containing protein	-	4e-23	At4g08455	BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.13389.1.S1_at	AF457983.1	seed maturation protein	-	9e+0	At4g22680	MYB85 (myb domain protein 85)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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