Gene omics information

Query gene ID	Contig12805_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	61.0	Contig12805_at	Contig12805	-	-	1e-1	At5g19540	unknown protein	S.X.	H.G.	Please select
0.76	89.8	Contig1364_at	Contig1364	-	-	4e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	S.X.	H.G.	Please select
0.71	87.1	rbags14j23_s_at	rbags14j23	-	-	6e-1	At3g53668	CPuORF51 (Conserved peptide upstream open reading frame 51)	S.X.	H.G.	Please select
0.63	80.3	Contig12544_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	S.X.	H.G.	Please select
0.60	77.3	Contig7625_at	Contig7625	-	-	4e-1	At5g36659	-	S.X.	H.G.	Please select
0.60	77.3	Contig23795_at	Contig23795	-	-	1e+1	At5g49220	unknown protein	S.X.	H.G.	Please select
0.58	74.9	Contig7246_at	Contig7246	-	-	1e-10	At5g14260	SET domain-containing protein	S.X.	H.G.	Please select
0.58	74.9	Contig742_at	Contig742	-	-	4e-3	At1g48920	ATNUC-L1	S.X.	H.G.	Please select
0.57	74.9	Contig6820_at	Contig6820	-	-	7e-12	At4g13350	NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE)	S.X.	H.G.	Please select
0.55	72.0	Contig14007_at	Contig14007	-	-	2e-1	At2g17780	MCA2 (mid1-complementing activity 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.9	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.4	97.5	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
5.3	97.4	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.1	97.3	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.8	97.0	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.7	96.9	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.6	96.8	GSM372959	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
4.1	96.2	GSM160744	drought control rep2	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	9e-1	34	Contig14545_at	Contig14545	-	-	7e-1	At3g47830	HhH-GPD base excision DNA repair protein-related	C.G.	S.X.	Please select
0.02	9e-1	34	Contig4437_at	Contig4437	-	-	7e+0	At5g67600	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig8690_at	Contig8690	-	-	2e-1	At3g61870	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig7874_at	Contig7874	-	-	7e-3	At4g29430	rps15ae (ribosomal protein S15A E)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig5748_at	Contig5748	-	-	6e-2	At4g32330	-	C.G.	S.X.	Please select
0.02	4e+0	32	Contig15465_at	Contig15465	-	-	2e-2	At2g39550	PGGT-I	C.G.	S.X.	Please select
0.01	4e+0	32	Contig12066_at	Contig12066	-	-	1e-11	At1g51390	NFU5	C.G.	S.X.	Please select
0.01	4e+0	32	Contig11483_at	Contig11483	-	-	2e-1	At1g47970	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig2132_at	Contig2132	-	-	4e-71	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At5g19540	832074	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	4e-2	40	Glycine max	GmaAffx.78534.1.S1_at	BQ297217	-	-	8e-14	At5g19540	unknown protein	C.G.	S.X.	Please select
0.45	5e-138	492	Oryza sativa	Os.54411.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	4e-5	50	Populus trichocarpa	PtpAffx.3690.1.A1_at	BP930659	hypothetical protein	-	2e-9	At5g19540	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	0	1225	Triticum aestivum	Ta.17068.1.S1_at	CA598221	-	-	5e-2	At5g11550	binding	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1616471_at	CF369074	-	-	3e+0	At1g50290	unknown protein	C.G.	S.X.	Please select
0.35	4e-49	194	Zea mays	Zm.15331.1.S1_at	CB350880	hypothetical protein LOC100275547	-	5e-3	At5g19540	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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