Gene omics information

Query gene ID	Contig12784_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig12784_at	Contig12784	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	S.X.	H.G.	Please select
0.67	84.7	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	S.X.	H.G.	Please select
0.55	72.0	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	S.X.	H.G.	Please select
0.35	45.1	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.33	42.6	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	S.X.	H.G.	Please select
0.32	40.3	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	99.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.9	99.4	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.3	99.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.9	99.1	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.6	99.0	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.3	99.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2	98.5	GSM372941	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.0	98.4	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.3	97.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Contig4578_at	Contig4578	-	-	7e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig19214_at	Contig19214	-	-	6e-4	At2g25810	TIP4	C.G.	S.X.	Please select
0.02	1e+0	34	Contig19021_at	Contig19021	-	-	9e-8	At1g78650	POLD3	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8238_at	Contig8238	-	-	5e-1	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig5985_at	Contig5985	-	-	1e-3	At3g50590	nucleotide binding	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4579_s_at	Contig4579	-	-	2e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	C.G.	S.X.	Please select
0.01	6e+0	32	Contig4395_at	Contig4395	-	-	3e-1	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please select
0.01	6e+0	32	Contig8064_at	Contig8064	-	-	1e-1	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.01	6e+0	32	Contig5790_at	Contig5790	-	-	1e+0	At1g56060	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-10	67	Arabidopsis thaliana	At1g28520	839752	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	5e-15	83	Glycine max	Gma.9278.1.S1_at	BE058127	-	-	3e-20	At2g42400	VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2)	C.G.	S.X.	Please select
0.57	0	950	Oryza sativa	Os01g0753000	NM_191259.1	-	Conserved hypothetical protein	2e-11	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	3e-25	117	Populus trichocarpa	PtpAffx.216408.1.S1_at	pmrna31170	hypothetical protein	-	1e-20	At2g42400	VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	1941	Triticum aestivum	TaAffx.12873.1.S1_at	BJ220987	-	-	1e-5	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1608727_at	CB973542	hypothetical protein LOC100243647	-	4e-9	At2g45470	FLA8 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8)	C.G.	S.X.	Please select
0.18	6e-12	71	Zea mays	Zm.18440.1.A1_at	CD981825	hypothetical protein LOC100280171	-	1e+0	At5g46090	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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