Gene omics information

Query gene ID	Contig12779_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig12779_at	Contig12779	-	-	2e-2	At4g35470	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.77	90.8	Contig2826_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	S.X.	H.G.	Please select
0.63	80.3	Contig3265_s_at	Contig3265	-	-	3e-2	At2g35910	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.56	74.3	Contig5342_at	Contig5342	-	-	4e-3	At3g56150	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)	S.X.	H.G.	Please select
0.47	62.2	Contig3963_s_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	S.X.	H.G.	Please select
0.40	53.1	HV05M01u_x_at	HV05M01u	-	-	8e+0	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.38	49.5	Contig8436_s_at	Contig8436	-	-	7e-2	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.6	98.8	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.6	98.8	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.1	98.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.8	98.3	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.7	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3	97.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-3	44	Contig7573_at	Contig7573	-	-	9e-12	At1g21065	unknown protein	C.G.	S.X.	Please select
0.02	2e-3	44	Contig4938_s_at	Contig4938	-	-	8e-47	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.02	8e-3	42	Contig7936_at	Contig7936	-	-	1e-14	At4g38320	HHP5 (heptahelical protein 5)	C.G.	S.X.	Please select
0.02	8e-3	42	Contig13119_at	Contig13119	-	-	5e-1	At5g19090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	8e-3	42	Contig6935_at	Contig6935	-	-	2e-5	At5g27540	MIRO1 (Miro-related GTP-ase 1)	C.G.	S.X.	Please select
0.02	8e-3	42	Contig11084_at	Contig11084	-	-	2e-4	At4g35470	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.01	3e-2	40	Contig6894_at	Contig6894	-	-	2e-17	At3g57610	ADSS (ADENYLOSUCCINATE SYNTHASE)	C.G.	S.X.	Please select
0.04	3e-2	40	Contig1071_s_at	Contig1071	-	-	5e-3	At5g19090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	3e-2	40	Contig9124_at	Contig9124	-	-	2e+0	Atmg01020	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	42	Arabidopsis thaliana	At4g35470	829699	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:plasma membrane;MPBOFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-8	61	Glycine max	Gma.7395.1.A1_at	BU547411	-	-	3e-1	At3g06060	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.54	0	900	Oryza sativa	Os10g0572300	AK102709.1	-	Leucine-rich repeat, typical subtype containingprotein	1e-3	At4g35470	leucine-rich repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-2	42	Populus trichocarpa	PtpAffx.222005.1.S1_s_at	pmrna39194	hypothetical protein	-	1e+0	At2g04425	LCR82 (Low-molecular-weight cysteine-rich 82)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	2e-66	254	Triticum aestivum	TaAffx.109315.1.S1_at	CA677134	-	-	4e+0	At1g64160	disease resistance-responsive family protein / dirigent family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Vitis vinifera	1616806_at	CF605749	hypothetical protein LOC100259004	-	6e-2	At2g01340	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	40	Zea mays	Zm.4496.1.A1_at	AY112137.1	hypothetical protein LOC100275632	-	9e-2	At2g35800	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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