CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig12775_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 66.9 Contig12775_at Contig12775 - - 1e+0 At3g63490 ribosomal protein L1 family protein S.X. H.G.
0.50 66.9 Contig18163_s_at Contig18163 - - 1e+0 At4g07825 unknown protein S.X. H.G.
0.47 62.2 Contig9200_at Contig9200 - - 6e-1 At5g10230 ANNAT7 (ANNEXIN ARABIDOPSIS 7) S.X. H.G.
0.40 53.1 Contig26049_at Contig26049 - - 2e+0 At4g17340 TIP2 S.X. H.G.
0.39 50.5 Contig6741_at Contig6741 - - 7e-2 At1g04770 male sterility MS5 family protein S.X. H.G.
0.33 42.6 Contig1056_s_at Contig1056 - - 5e-140 At4g05050 UBQ11 (UBIQUITIN 11) S.X. H.G.
0.31 38.6 Contig14920_at Contig14920 - - 2e-2 At1g52940 PAP5 (PURPLE ACID PHOSPHATASE 5) S.X. H.G.
0.31 38.6 Contig5510_s_at Contig5510 - - 1e-1 At5g04250 OTU-like cysteine protease family protein S.X. H.G.
0.27 32.1 Contig9642_at Contig9642 - - 1e-13 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) S.X. H.G.
0.22 24.2 Contig9902_at Contig9902 - - 2e+0 At5g35170 adenylate kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
157.0 100.0 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
128.9 100.0 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
54.6 100.0 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
18.8 99.7 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
10.7 99.2 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
7.7 98.6 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
2.0 89.0 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
1.6 85.5 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
1.2 80.2 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
1.0 76.4 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 5e-5 48 Contig25923_at Contig25923 - - 1e+0 At5g21060 homoserine dehydrogenase family protein C.G. S.X.
0.06 2e-4 46 Contig5257_at Contig5257 - - 1e+0 At4g00200 DNA binding C.G. S.X.
0.04 7e-4 44 Contig324_at Contig324 - - 1e-74 At3g11510 40S ribosomal protein S14 (RPS14B) C.G. S.X.
0.03 3e-3 42 Contig5322_at Contig5322 - - 4e-1 At5g37550 unknown protein C.G. S.X.
0.03 3e-3 42 Contig5322_s_at Contig5322 - - 4e-1 At5g37550 unknown protein C.G. S.X.
0.03 1e-2 40 Contig5927_at Contig5927 - - 1e-1 At1g22480 plastocyanin-like domain-containing protein C.G. S.X.
0.04 1e-2 40 Contig17957_at Contig17957 - - 4e-1 At1g22480 plastocyanin-like domain-containing protein C.G. S.X.
0.02 4e-2 38 Contig8854_at Contig8854 - - 1e-5 At3g02110 scpl25 (serine carboxypeptidase-like 25) C.G. S.X.
0.02 4e-2 38 Contig14111_at Contig14111 - - 1e-18 At5g22480 zinc finger (ZPR1-type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At3g63490 825524 ribosomal protein L1 family protein F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:in 6 components;OBAFMP - - - C.G. S.X.
0.06 1e-1 38 Glycine max Gma.14563.1.S1_s_at CD399224 - - 8e-2 At5g40470 - C.G. S.X.
0.35 3e-49 196 Oryza sativa Os03g0259100 AK107381.1 - Basic blue protein (Cusacyanin) (Plantacyanin)(CBP) 2e-2 At2g02850 ARPN (PLANTACYANIN) C.G. S.X.
0.04 8e+0 32 Populus trichocarpa PtpAffx.94956.1.A1_at CV265474 - - 3e-1 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) C.G. S.X.
0.61 0 642 Triticum aestivum Ta.30891.1.S1_at BJ219255 - - 6e+0 At5g65220 ribosomal protein L29 family protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1610797_at CF413916 - - 6e-2 At3g15440 - C.G. S.X.
0.35 2e-40 165 Zea mays Zm.13505.1.A1_at AY108638.1 chemocyanin - 2e-2 At1g04778 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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