Gene omics information

Query gene ID	Contig12766_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig12766_at	Contig12766	-	-	2e-6	At1g51690	ATB ALPHA	S.X.	H.G.	Please select
0.67	84.7	Contig2273_at	Contig2273	-	-	4e+0	At1g69526	UbiE/COQ5 methyltransferase family protein	S.X.	H.G.	Please select
0.50	66.9	Contig12376_at	Contig12376	-	-	9e+0	At5g56120	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig18407_at	Contig18407	-	-	2e+0	At3g50450	HR1 (HOMOLOG OF RPW8 1)	S.X.	H.G.	Please select
0.27	32.1	Contig18939_at	Contig18939	-	-	3e-2	At4g35700	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.11	9.4	Contig3848_s_at	Contig3848	-	-	7e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	97.2	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.6	96.8	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.5	96.7	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
4.5	96.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
4.0	96.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.8	95.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	2e-70	266	Contig4597_at	Contig4597	-	-	2e-48	At1g17720	ATB BETA	C.G.	S.X.	Please select
0.02	3e-1	36	Contig21576_at	Contig21576	-	-	1e+0	At5g02440	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig8172_at	Contig8172	-	-	2e+0	At5g62350	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig6204_at	Contig6204	-	-	4e-2	At3g59845	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Contig4292_at	Contig4292	-	-	9e-22	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig3479_at	Contig3479	-	-	4e-15	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	C.G.	S.X.	Please select
0.02	4e+0	32	HVSMEa0014H14r2_s_at	HVSMEa0014H14r2	-	-	4e+0	At4g13260	YUC2 (YUCCA2)	C.G.	S.X.	Please select
0.02	4e+0	32	HVSMEf0009L21r2_s_at	HVSMEf0009L21r2	-	-	3e-1	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	C.G.	S.X.	Please select
0.06	4e+0	32	Contig18412_at	Contig18412	-	-	4e-16	At1g17720	ATB BETA	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-6	54	Arabidopsis thaliana	At1g51690	841594	ATB ALPHA	55 kDa B regulatory subunit of phosphatase 2A mRNA,	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	1e-14	81	Glycine max	Gma.15690.2.S1_at	AW570465	-	-	5e-40	At1g51690	ATB ALPHA	C.G.	S.X.	Please select
0.33	3e-155	549	Oryza sativa	Os.6155.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-20	101	Populus trichocarpa	PtpAffx.13778.1.S1_at	CK091687	hypothetical protein	-	4e-20	At1g17720	ATB BETA	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	1130	Triticum aestivum	Ta.10462.1.S1_x_at	BJ296009	-	-	2e-3	At1g51690	ATB ALPHA	C.G.	S.X.	Please select
0.18	1e-14	79	Vitis vinifera	1613769_at	CB970019	hypothetical protein LOC100265267	-	4e-48	At1g51690	ATB ALPHA	C.G.	S.X.	Please select
0.37	2e-79	295	Zea mays	Zm.6566.1.A1_at	AI621420	hypothetical protein LOC100191991	-	3e-5	At1g51690	ATB ALPHA	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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