Gene omics information

Query gene ID	Contig12742_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	62.2	Contig12742_at	Contig12742	-	-	2e+0	At4g10613	-	S.X.	H.G.	Please select
0.60	77.3	HVSMEf0010D24f2_x_at	HVSMEf0010D24f2	-	-	2e+0	At5g44110	POP1	S.X.	H.G.	Please select
0.57	74.9	HVSMEi0003D23r2_s_at	HVSMEi0003D23r2	-	-	8e-1	At3g44840	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	S.X.	H.G.	Please select
0.55	72.0	Contig18510_at	Contig18510	-	-	5e-11	At5g44240	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.55	72.0	Contig1795_at	Contig1795	-	-	3e-16	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.53	69.7	Contig12551_at	Contig12551	-	-	5e-1	At2g24590	splicing factor, putative	S.X.	H.G.	Please select
0.41	53.9	Contig1860_s_at	Contig1860	-	-	2e-3	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	S.X.	H.G.	Please select
0.40	53.1	Contig1154_s_at	Contig1154	-	-	4e-13	At1g07790	HTB1	S.X.	H.G.	Please select
0.40	53.1	Contig13689_at	Contig13689	-	-	6e+0	At1g48350	ribosomal protein L18 family protein	S.X.	H.G.	Please select
0.34	43.6	HVSMEg0015H12r2_s_at	HVSMEg0015H12r2	-	-	1e+0	At5g18040	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.9	99.8	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
22.5	99.8	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
20.7	99.7	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.9	99.7	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
18.7	99.7	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.6	99.6	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.6	99.6	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.6	99.5	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.4	99.4	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.3	99.4	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	3e-68	258	HA03G23u_at	HA03G23u	-	-	3e-1	At2g46670	pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative	C.G.	S.X.	Please select
0.03	1e-2	40	Contig11336_at	Contig11336	-	-	5e-1	At1g68220	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig14228_at	Contig14228	-	-	5e+0	At3g11420	fringe-related protein	C.G.	S.X.	Please select
0.06	2e-1	36	Contig11450_at	Contig11450	-	-	2e+0	At4g37830	cytochrome c oxidase-related	C.G.	S.X.	Please select
0.03	2e-1	36	Contig11001_at	Contig11001	-	-	3e-5	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig2967_at	Contig2967	-	-	4e-2	At4g28250	ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)	C.G.	S.X.	Please select
0.03	7e-1	34	HX03C24u_at	HX03C24u	-	-	1e-2	At5g47500	pectinesterase family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig4715_at	Contig4715	-	-	1e+0	At4g10810	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig14397_at	Contig14397	-	-	5e-1	At3g52105	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At4g10613	3770191	-	F:unknown;P:unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	1e-17	91	Glycine max	GmaAffx.90001.1.S1_at	CF805726	-	-	7e-5	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	C.G.	S.X.	Please select
0.43	9e-124	444	Oryza sativa	Os03g0669100	AK063633.1	-	Deoxyuridine 5'-triphosphate nucleotidohydrolase(EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) (P18)	4e-1	At5g62900	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.218869.1.S1_at	pmrna34612	hypothetical protein	-	1e+1	At2g31610	40S ribosomal protein S3 (RPS3A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	6e-37	155	Triticum aestivum	Ta.437.1.S1_at	BF478881	-	-	8e-1	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1619112_at	CF514730	hypothetical protein LOC100246349	-	1e+1	At5g01015	unknown protein	C.G.	S.X.	Please select
0.48	4e-141	500	Zea mays	Zm.2168.1.A1_at	BE638518	-	-	2e+0	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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