Gene omics information

Query gene ID Contig12731_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4863.2Contig12731_atContig12731--2e-4At3g59380FTA (FARNESYLTRANSFERASE A)S.X.H.G.
0.4458.9Contig14726_atContig14726--2e+0At3g10020unknown proteinS.X.H.G.
0.3443.6Contig16121_atContig16121--1e-1At5g35580ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseS.X.H.G.
0.2528.9Contig14780_atContig14780--3e-1At2g35960NHL12S.X.H.G.
0.2021.1HU05P16u_s_atHU05P16u--4e+0At3g29670transferase family proteinS.X.H.G.
0.2021.1Contig8938_atContig8938--7e-9At3g07300eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinS.X.H.G.
0.1311.6Contig11352_atContig11352--3e-5At3g56120Met-10+ like family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
26.499.8GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
16.899.6GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
13.899.5GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
13.399.4GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
11.999.3GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
11.699.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
10.999.2GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spike
10.999.2GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stress
9.198.9GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
8.098.7GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e-136Contig8811_atContig8811--2e+0At5g26170WRKY50C.G.S.X.
0.024e-136Contig10317_atContig10317--1e-7At3g13340WD-40 repeat family proteinC.G.S.X.
0.014e-136Contig4350_s_atContig4350--2e-85At2g42790CSY3 (citrate synthase 3)C.G.S.X.
0.014e-136Contig4350_atContig4350--2e-85At2g42790CSY3 (citrate synthase 3)C.G.S.X.
0.011e+034Contig3212_s_atContig3212--4e-3At5g13700ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1)C.G.S.X.
0.011e+034Contig12869_atContig12869--1e-1At1g61255-C.G.S.X.
0.011e+034Contig12669_atContig12669--1e-32At1g20575dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeC.G.S.X.
0.021e+034Contig12299_atContig12299--4e+0At3g61310DNA-binding family proteinC.G.S.X.
0.011e+034Contig12038_atContig12038--3e-2At5g01700protein phosphatase 2C, putative / PP2C, putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-448Arabidopsis thalianaAt3g59380825107FTA (FARNESYLTRANSFERASE A)Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.---C.G.S.X.
0.042e-552Glycine maxGmaAffx.56889.3.S1_atAW185190--6e-10At3g59380FTA (FARNESYLTRANSFERASE A)C.G.S.X.
0.590789Oryza sativaOs09g0514400AK060892.1-Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alphasubunit) (Ras proteins prenyltransferase alpha)(FTase-alpha) (Type I protein geranyl-geranyltransferasealpha subunit) (GGTase-I-alpha)7e-4At3g59380FTA (FARNESYLTRANSFERASE A)C.G.S.X.
0.054e+034Populus trichocarpaPtpAffx.42132.1.A1_atBP937064hypothetical protein-2e+0At5g60805-C.G.S.X.
0.5102282Triticum aestivumTa.27161.1.S1_atCK161726--5e-4At3g59380FTA (FARNESYLTRANSFERASE A)C.G.S.X.
0.022e-136Vitis vinifera1612663_atCB971054hypothetical protein LOC100250760-4e+0At5g52600AtMYB82 (myb domain protein 82)C.G.S.X.
0.245e-46184Zea maysZm.12921.1.A1_atCA401711hypothetical protein LOC100273635-6e+0At5g27290unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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