Gene omics information

Query gene ID	Contig12675_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.72	87.4	Contig12675_s_at	Contig12675	-	-	1e+0	At4g28150	unknown protein	S.X.	H.G.	Please select
0.89	95.4	Contig3729_at	Contig3729	-	-	7e+0	At5g60560	F-box family protein	S.X.	H.G.	Please select
0.82	93.1	Contig17811_at	Contig17811	-	-	4e+0	At2g05590	-	S.X.	H.G.	Please select
0.82	93.1	Contig8003_at	Contig8003	-	-	2e+0	At5g22100	RNA cyclase family protein	S.X.	H.G.	Please select
0.78	91.2	Contig16285_at	Contig16285	-	-	8e-2	At4g31390	ABC1 family protein	S.X.	H.G.	Please select
0.78	91.2	Contig11985_at	Contig11985	-	-	3e-2	At5g18310	unknown protein	S.X.	H.G.	Please select
0.78	91.2	Contig9574_at	Contig9574	-	-	8e-9	At1g17330	metal-dependent phosphohydrolase HD domain-containing protein-related	S.X.	H.G.	Please select
0.78	91.2	HZ01L11u_at	HZ01L11u	-	-	3e+0	At4g26240	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig1339_at	Contig1339	-	-	4e-66	At3g56800	CAM3 (CALMODULIN 3)	S.X.	H.G.	Please select
0.60	77.3	Contig3728_at	Contig3728	-	-	9e-28	At3g62560	GTP-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.5	99.6	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
11.7	99.3	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
10.8	99.2	GSM363460	Control (C) - rep1	GSE14521	Late response to boron toxicity in barley leaves
9.8	99.1	GSM363466	10 mM B(OH)3 treatment (10B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
7.2	98.5	GSM363462	Control (C) - rep3	GSE14521	Late response to boron toxicity in barley leaves
6.7	98.3	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.6	97.7	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.3	97.4	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.1	97.3	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.0	97.2	GSM363468	10 mM B(OH)3 treatment (10B) - rep3	GSE14521	Late response to boron toxicity in barley leaves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	954	Contig12676_at	Contig12676	-	-	3e-1	At4g28150	unknown protein	C.G.	S.X.	Please select
0.02	9e-3	40	Contig8657_at	Contig8657	-	-	7e-10	At5g58740	nuclear movement family protein	C.G.	S.X.	Please select
0.02	4e-2	38	Contig12723_at	Contig12723	-	-	5e-1	At5g46840	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	1e-1	36	baak12g08_s_at	baak12g08	-	-	3e-9	At1g67600	-	C.G.	S.X.	Please select
0.03	1e-1	36	Contig20018_at	Contig20018	-	-	2e-5	At1g24350	-	C.G.	S.X.	Please select
0.01	5e-1	34	Contig4092_at	Contig4092	-	-	1e-2	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	C.G.	S.X.	Please select
0.03	5e-1	34	Contig4095_s_at	Contig4095	-	-	1e+0	At5g55010	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig2607_at	Contig2607	-	-	4e-4	At5g66010	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.04	5e-1	34	HY08C12u_at	HY08C12u	-	-	3e+0	At5g23640	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At4g28150	828930	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-2	40	Glycine max	GmaAffx.66478.1.A1_at	AW348138	-	-	2e-3	At4g28150	unknown protein	C.G.	S.X.	Please select
0.03	2e-3	44	Oryza sativa	Os02g0827400	9630.m05797	-	Protein of unknown function DUF789 family protein	1e-1	At1g15030	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.210821.1.S1_at	pmrna21240	hypothetical protein	-	2e-2	At1g52290	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	4e-65	248	Triticum aestivum	Ta.12035.1.S1_at	BQ171309	-	-	1e+1	At5g40980	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1610725_at	CA811204	-	-	4e-2	At2g45800	LIM domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.1134.1.A1_at	AW331087	-	-	8e-1	At4g10270	wound-responsive family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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