Gene omics information

Query gene ID	Contig12594_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	S.X.	H.G.	Please select
0.77	90.8	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	S.X.	H.G.	Please select
0.73	88.7	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig15241_at	Contig15241	-	-	6e+0	At3g44280	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	S.X.	H.G.	Please select
0.47	62.2	Contig24555_at	Contig24555	-	-	1e+0	At2g45070	SEC61 BETA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.5	99.4	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.5	99.4	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
11.7	99.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
11.6	99.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.6	99.3	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
11.3	99.3	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.3	99.3	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
10.9	99.2	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.3	98.8	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.3	98.8	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	4e-115	414	HM09O05r_at	HM09O05r	-	-	9e-1	At1g50691	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig25578_at	Contig25578	-	-	2e-5	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	C.G.	S.X.	Please select
0.02	9e-2	38	Contig5434_at	Contig5434	-	-	7e+0	At5g15260	structural constituent of ribosome	C.G.	S.X.	Please select
0.02	4e-1	36	Contig20428_at	Contig20428	-	-	5e-4	At5g02070	protein kinase-related	C.G.	S.X.	Please select
0.01	4e-1	36	Contig15164_at	Contig15164	-	-	8e-3	At4g39950	CYP79B2	C.G.	S.X.	Please select
0.02	4e-1	36	Contig7517_at	Contig7517	-	-	5e+0	Atcg00470	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig9372_at	Contig9372	-	-	1e-2	At5g42480	ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4644_at	Contig4644	-	-	3e-7	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.02	1e+0	34	HV12E17u_at	HV12E17u	-	-	3e-1	At3g01190	peroxidase 27 (PER27) (P27) (PRXR7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At5g11990	831072	proline-rich family protein	F:unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	34	Glycine max	PsAffx.CL667Contig2_at	PsAffx.CL667Contig2	-	-	5e-3	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	C.G.	S.X.	Please select
0.49	2e-120	434	Oryza sativa	Os04g0580300	AK100294.1	-	GRAS transcription factor domain containingprotein	2e-2	At5g52510	scarecrow-like transcription factor 8 (SCL8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.220737.1.S1_at	pmrna37156	hypothetical protein	-	3e+0	At5g54190	PORA	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	8e-118	424	Triticum aestivum	Ta.16044.1.S1_at	CA595910	-	-	3e+0	At3g16570	RALFL23 (ralf-like 23)	C.G.	S.X.	Please select
0.06	1e-2	40	Vitis vinifera	1609074_at	CF404778	hypothetical protein LOC100261057	-	6e-2	At5g52510	scarecrow-like transcription factor 8 (SCL8)	C.G.	S.X.	Please select
0.09	9e-11	67	Zea mays	ZmAffx.513.1.A1_at	AI692067	-	-	1e+1	At4g05260	ubiquitin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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