Gene omics information

Query gene ID	Contig12570_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig12570_at	Contig12570	-	-	5e-29	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	S.X.	H.G.	Please select
0.83	94.0	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	S.X.	H.G.	Please select
0.61	78.7	S0001000055K01F1_at	S0001000055K01F1	-	-	3e+0	At2g24310	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig1648_at	Contig1648	-	-	3e-18	At1g66200	ATGSR2	S.X.	H.G.	Please select
0.50	66.9	Contig18921_at	Contig18921	-	-	1e+0	At1g49520	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select
0.33	42.6	HVSMEn0017F07r2_at	HVSMEn0017F07r2	-	-	3e-7	At1g78560	bile acid:sodium symporter family protein	S.X.	H.G.	Please select
0.15	14.1	HB25J22r_x_at	HB25J22r	-	-	9e+0	At5g04790	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.6	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.5	97.6	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3	96.4	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.1	96.2	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-102	373	HVSMEi0015K21r2_x_at	HVSMEi0015K21r2	-	-	8e+0	Atcg00360	-	C.G.	S.X.	Please select
0.33	1e-102	373	HVSMEi0015K21r2_s_at	HVSMEi0015K21r2	-	-	8e+0	Atcg00360	-	C.G.	S.X.	Please select
0.12	2e-18	93	Contig8705_at	Contig8705	-	-	1e-58	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	C.G.	S.X.	Please select
0.09	5e-12	71	Contig12467_at	Contig12467	-	-	5e-11	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	C.G.	S.X.	Please select
0.07	5e-12	71	Contig5435_at	Contig5435	-	-	8e-16	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig4056_at	Contig4056	-	-	7e-2	At1g64185	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select
0.02	3e-1	36	HS17O06u_at	HS17O06u	-	-	3e+0	At1g22767	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig17516_at	Contig17516	-	-	7e+0	At5g63440	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig4056_s_at	Contig4056	pathogenesis-related protein	-	7e-2	At1g64185	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	5e-29	129	Arabidopsis thaliana	At3g53570	824525	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	a member of a CDC2-related kinase subfamily, the LAMMER kinases. activates STE12-dependent functions in yeast.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-14	81	Glycine max	Gma.16637.1.A1_at	BE657305	-	-	2e-6	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	C.G.	S.X.	Please select
0.27	7e-30	133	Oryza sativa	OsAffx.20119.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	3e-28	127	Populus trichocarpa	PtpAffx.208657.1.S1_at	pmrna17178	hypothetical protein	-	1e-26	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	0	821	Triticum aestivum	Ta.14152.1.S1_at	CD490559	-	-	1e-3	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	C.G.	S.X.	Please select
0.30	2e-25	115	Vitis vinifera	1613915_s_at	CA810703	hypothetical protein LOC100263937	-	7e-90	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	C.G.	S.X.	Please select
0.46	5e-160	563	Zea mays	Zm.19250.1.S1_at	BG841370	-	-	3e-12	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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