Gene omics information

Query gene ID	Contig12569_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig12569_at	Contig12569	-	-	1e+0	At4g01680	MYB55 (myb domain protein 55)	S.X.	H.G.	Please select
0.57	74.9	Contig20846_at	Contig20846	-	-	3e-6	At4g36860	zinc ion binding	S.X.	H.G.	Please select
0.55	72.0	HVSMEn0023O21f_s_at	HVSMEn0023O21f	-	-	9e-1	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	S.X.	H.G.	Please select
0.50	66.9	Contig18444_at	Contig18444	-	-	2e+0	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	S.X.	H.G.	Please select
0.44	58.9	Contig78_s_at	Contig78	-	-	4e-5	At1g15690	AVP1	S.X.	H.G.	Please select
0.40	53.1	Contig20893_at	Contig20893	-	-	4e-2	At1g44542	cyclase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.9	99.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.1	99.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
22.5	99.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
21.6	99.8	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
21.2	99.7	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
19.9	99.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.6	99.0	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.9	98.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	3e-126	450	HVSMEl0025J01f_s_at	HVSMEl0025J01f	-	-	1e+1	At5g65166	unknown protein	C.G.	S.X.	Please select
0.65	3e-126	450	HVSMEl0025J01f_at	HVSMEl0025J01f	-	-	1e+1	At5g65166	unknown protein	C.G.	S.X.	Please select
0.05	2e-4	46	HY06I17u_at	HY06I17u	-	-	3e+0	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	C.G.	S.X.	Please select
0.03	1e-1	36	Contig17419_at	Contig17419	-	-	2e-2	At2g14835	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig9391_at	Contig9391	-	-	2e+0	At5g05440	unknown protein	C.G.	S.X.	Please select
0.05	6e-1	34	Contig16640_at	Contig16640	-	-	3e-1	At5g21430	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig24149_at	Contig24149	-	-	4e-1	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig5642_at	Contig5642	-	-	2e-5	At4g24330	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	34	Contig1281_at	Contig1281	-	-	3e-1	At1g36925	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g01680	826853	MYB55 (myb domain protein 55)	Encodes a putative transcription factor (MYB55).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.11480.1.S1_at	CB934970	-	-	1e+0	At3g58300	unknown protein	C.G.	S.X.	Please select
0.07	6e-4	46	Oryza sativa	OsAffx.32144.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.71659.1.S1_at	CF232889	hypothetical protein	-	9e-8	At3g52790	peptidoglycan-binding LysM domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	3e-7	56	Triticum aestivum	Ta.242.2.S1_at	BU607142	-	-	5e+0	At4g33520	PAA1 (P-TYPE ATP-ASE 1)	C.G.	S.X.	Please select
0.03	2e-2	38	Vitis vinifera	1613598_at	CB344526	hypothetical protein LOC100256270	-	2e-2	At4g03200	catalytic	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.14994.1.A1_at	BQ538997	hypothetical protein LOC100275284	-	1e+0	At3g13310	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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