Gene omics information

Query gene ID	Contig12534_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig12534_at	Contig12534	-	-	4e-1	At1g69828	-	S.X.	H.G.	Please select
0.50	66.9	Contig17196_at	Contig17196	-	-	2e-4	At5g06180	-	S.X.	H.G.	Please select
0.44	58.9	rbaal1m15_s_at	rbaal1m15	-	-	2e-1	At4g22560	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig11226_at	Contig11226	-	-	4e+0	At1g32360	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.23	26.1	Contig14831_at	Contig14831	-	-	7e+0	At5g22545	unknown protein	S.X.	H.G.	Please select
0.19	19.6	Contig14919_at	Contig14919	-	-	8e-34	At3g61790	seven in absentia (SINA) family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
247.5	100.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
105.8	100.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
22.9	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.8	99.7	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
0.7	68.9	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
0.7	68.9	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
0.6	65.6	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
0.5	61.9	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
0.4	57.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-10	65	Contig13998_at	Contig13998	-	-	2e+0	At1g36240	60S ribosomal protein L30 (RPL30A)	C.G.	S.X.	Please select
0.06	3e-3	42	Contig22353_x_at	Contig22353	-	-	1e-1	At4g14110	COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)	C.G.	S.X.	Please select
0.03	3e-3	42	Contig3265_s_at	Contig3265	-	-	3e-2	At2g35910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.06	3e-3	42	Contig22353_at	Contig22353	-	-	1e-1	At4g14110	COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)	C.G.	S.X.	Please select
0.03	3e-3	42	Contig3265_at	Contig3265	-	-	3e-2	At2g35910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e-3	42	Contig902_x_at	Contig902	-	-	0	At1g50010	TUA2	C.G.	S.X.	Please select
0.03	3e-3	42	Contig169_at	Contig169	-	-	1e-19	At4g14960	TUA6	C.G.	S.X.	Please select
0.03	2e-1	36	EBro08_SQ010_O16_at	EBro08_SQ010_O16	-	-	3e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig6736_at	Contig6736	-	-	1e-6	At3g63130	RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-1	36	Arabidopsis thaliana	At1g69828	3767681	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	PsAffx.CL1394Contig1_s_at	PsAffx.CL1394Contig1	-	-	9e-1	At1g05420	OFP12 (OVATE FAMILY PROTEIN 12)	C.G.	S.X.	Please select
0.04	1e-2	42	Oryza sativa	Os03g0758500	AK059403.1	-	Plastocyanin-like domain containing protein	2e+0	At5g02160	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.205984.1.S1_at	pmrna11860	hypothetical protein	-	3e-2	At1g62333	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	3e-159	561	Triticum aestivum	Ta.4272.1.S1_at	BJ256995	-	-	8e-2	At1g17330	metal-dependent phosphohydrolase HD domain-containing protein-related	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1622474_at	CF373640	-	-	3e+0	At1g54445	-	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.4530.1.A1_at	CK827450	hypothetical protein LOC100276667	-	1e-1	At5g33898	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage