Gene omics information

Query gene ID Contig12534_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4458.9Contig12534_atContig12534--4e-1At1g69828-S.X.H.G.
0.5066.9Contig17196_atContig17196--2e-4At5g06180-S.X.H.G.
0.4458.9rbaal1m15_s_atrbaal1m15--2e-1At4g22560unknown proteinS.X.H.G.
0.3342.6Contig11226_atContig11226--4e+0At1g32360zinc finger (CCCH-type) family proteinS.X.H.G.
0.2326.1Contig14831_atContig14831--7e+0At5g22545unknown proteinS.X.H.G.
0.1919.6Contig14919_atContig14919--8e-34At3g61790seven in absentia (SINA) family proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
247.5100.0GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
105.8100.0GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
22.999.8GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.899.7GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
3.795.5GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
0.768.9GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seeds
0.768.9GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seeds
0.665.6GSM282022Malting_day4_Merit_rep4GSE11200Expression data from malting barley seeds
0.561.9GSM282024Malting_day4_Merit_rep2GSE11200Expression data from malting barley seeds
0.457.6GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seeds
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.142e-1065Contig13998_atContig13998--2e+0At1g3624060S ribosomal protein L30 (RPL30A)C.G.S.X.
0.063e-342Contig22353_x_atContig22353--1e-1At4g14110COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)C.G.S.X.
0.033e-342Contig3265_s_atContig3265--3e-2At2g35910zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.063e-342Contig22353_atContig22353--1e-1At4g14110COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)C.G.S.X.
0.033e-342Contig3265_atContig3265--3e-2At2g35910zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.023e-342Contig902_x_atContig902--0At1g50010TUA2C.G.S.X.
0.033e-342Contig169_atContig169--1e-19At4g14960TUA6C.G.S.X.
0.032e-136EBro08_SQ010_O16_atEBro08_SQ010_O16--3e+0At1g27970NTF2B (NUCLEAR TRANSPORT FACTOR 2B)C.G.S.X.
0.012e-136Contig6736_atContig6736--1e-6At3g63130RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e-136Arabidopsis thalianaAt1g698283767681-Encodes a defensin-like (DEFL) family protein.---C.G.S.X.
0.041e-138Glycine maxPsAffx.CL1394Contig1_s_atPsAffx.CL1394Contig1--9e-1At1g05420OFP12 (OVATE FAMILY PROTEIN 12)C.G.S.X.
0.041e-242Oryza sativaOs03g0758500AK059403.1-Plastocyanin-like domain containing protein2e+0At5g02160unknown proteinC.G.S.X.
0.035e-136Populus trichocarpaPtpAffx.205984.1.S1_atpmrna11860hypothetical protein-3e-2At1g62333unknown proteinC.G.S.X.
0.723e-159561Triticum aestivumTa.4272.1.S1_atBJ256995--8e-2At1g17330metal-dependent phosphohydrolase HD domain-containing protein-relatedC.G.S.X.
0.042e+032Vitis vinifera1622474_atCF373640--3e+0At1g54445-C.G.S.X.
0.032e-136Zea maysZm.4530.1.A1_atCK827450hypothetical protein LOC100276667-1e-1At5g33898unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage