Gene omics information

Query gene ID	Contig12510_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	91.2	Contig12510_at	Contig12510	-	-	4e-1	At5g26790	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig20721_s_at	Contig20721	-	-	5e-2	At2g26110	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig12509_at	Contig12509	-	-	1e-1	At3g56630	CYP94D2	S.X.	H.G.	Please select
0.32	40.3	Contig18263_at	Contig18263	-	-	3e-3	At3g06200	guanylate kinase, putative	S.X.	H.G.	Please select
0.27	32.1	Contig21005_at	Contig21005	-	-	5e+0	At4g22570	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)	S.X.	H.G.	Please select
0.11	9.4	Contig14865_at	Contig14865	-	-	5e-5	At4g26760	MAP65-2	S.X.	H.G.	Please select
0.10	8.4	Contig132_at	Contig132	-	-	3e-12	At1g36240	60S ribosomal protein L30 (RPL30A)	S.X.	H.G.	Please select
0.09	7.4	Contig10082_at	Contig10082	-	-	2e+0	At5g24650	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.0	99.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
22.2	99.8	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
21.4	99.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
14.5	99.5	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
14.5	99.5	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
14.2	99.5	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.0	99.3	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.4	99.3	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.2	98.7	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
8.2	98.7	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	6e-32	137	Contig4479_s_at	Contig4479	-	-	7e-1	At4g01200	C2 domain-containing protein	C.G.	S.X.	Please select
0.33	6e-32	137	Contig4478_at	Contig4478	-	-	7e-1	At4g01200	C2 domain-containing protein	C.G.	S.X.	Please select
0.37	3e-28	125	Contig4477_at	Contig4477	-	-	4e-2	At4g10610	CID12	C.G.	S.X.	Please select
0.08	2e-16	85	Contig13380_at	Contig13380	-	-	2e-2	At4g19270	unknown protein	C.G.	S.X.	Please select
0.04	8e-7	54	Contig11037_at	Contig11037	-	-	7e+0	At5g23908	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	Contig3058_at	Contig3058	-	-	2e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.02	2e-1	36	Contig14337_at	Contig14337	-	-	4e-8	At5g12870	MYB46 (MYB DOMAIN PROTEIN 46)	C.G.	S.X.	Please select
0.03	7e-1	34	Contig18504_s_at	Contig18504	-	-	2e-5	At1g60940	SNRK2.10 (SNF1-RELATED PROTEIN KINASE 2.10)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig9175_at	Contig9175	-	-	2e-26	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-1	36	Arabidopsis thaliana	At5g26790	832737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.20092.1.S1_at	CA800412	-	-	5e-2	At1g50930	unknown protein	C.G.	S.X.	Please select
0.21	1e-20	101	Oryza sativa	Os03g0345700	9631.m02244	-	Hypothetical protein	3e-3	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.215086.1.S1_at	pmrna29061	hypothetical protein	-	4e+0	At1g76090	SMT3 (STEROL METHYLTRANSFERASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	2e-55	216	Triticum aestivum	Ta.9290.1.S1_at	CD865398	-	-	8e-1	At1g14455	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621391_at	CD801716	hypothetical protein LOC100251148	-	4e+0	At5g47980	transferase family protein	C.G.	S.X.	Please select
0.22	1e-11	69	Zea mays	Zm.3662.1.A1_s_at	AY108718.1	hypothetical protein LOC100280024	-	2e-1	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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