Gene omics information

Query gene ID	Contig12506_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	S.X.	H.G.	Please select
0.50	66.9	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	S.X.	H.G.	Please select
0.43	56.4	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	S.X.	H.G.	Please select
0.36	47.1	Contig20667_at	Contig20667	-	-	1e+0	At5g08480	VQ motif-containing protein	S.X.	H.G.	Please select
0.31	38.6	HVSMEb0011J07r2_at	HVSMEb0011J07r2	-	-	4e-3	At5g39670	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.23	26.1	Contig4367_s_at	Contig4367	-	-	3e+0	At3g04300	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.1	98.7	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.7	98.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.4	97.5	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.4	97.5	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Contig19625_at	Contig19625	-	-	1e-3	At2g02070	AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5)	C.G.	S.X.	Please select
0.01	7e-2	38	Contig8527_at	Contig8527	-	-	7e-1	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig9174_at	Contig9174	-	-	1e-2	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig14253_at	Contig14253	-	-	2e+0	At5g50800	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.02	1e+0	34	HW01L12u_at	HW01L12u	-	-	8e-7	At4g35600	CONNEXIN 32	C.G.	S.X.	Please select
0.02	1e+0	34	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig1424_at	Contig1424	-	-	2e-119	At5g17920	ATMS1	C.G.	S.X.	Please select
0.02	4e+0	32	Contig26212_at	Contig26212	-	-	4e-3	At1g49950	DNA-binding protein, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Contig18091_at	Contig18091	-	-	2e+0	At5g02020	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g31740	829302	-	F:molecular_function unknown;P:vesicle-mediated transport, vesicle docking during exocytosis;C:endomembrane system;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	8e-7	56	Glycine max	Gma.2835.1.S1_at	BI969866	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	C.G.	S.X.	Please select
0.38	0	751	Oryza sativa	Os04g0541500	AK121106.1	-	Diacylglycerol kinase, catalytic region domaincontaining protein	7e-6	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	2e-10	67	Populus trichocarpa	PtpAffx.11478.2.S1_at	CN521030	hypothetical protein	-	5e-28	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	0	1643	Triticum aestivum	TaAffx.22421.1.S1_at	BQ245262	-	-	2e-8	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	C.G.	S.X.	Please select
0.11	1e-8	59	Vitis vinifera	1619784_at	CF209299	hypothetical protein LOC100248174	-	2e-9	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	C.G.	S.X.	Please select
0.34	7e-57	220	Zea mays	Zm.2973.1.A1_at	AW017746	hypothetical protein LOC100192564	-	1e+0	At3g52620	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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