CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig1248_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig1248_s_at Contig1248 - - 3e-8 At1g74060 60S ribosomal protein L6 (RPL6B) S.X. H.G.
0.80 92.5 HD04N07u_at HD04N07u - - 4e+0 At5g52940 unknown protein S.X. H.G.
0.73 88.7 Contig17526_at Contig17526 - - 4e+0 At4g33020 ZIP9 S.X. H.G.
0.67 84.7 HVSMEa0011L19r2_x_at HVSMEa0011L19r2 - - 5e-2 At3g50210 2-oxoacid-dependent oxidase, putative S.X. H.G.
0.63 80.3 Mla12DH_orf_3pri12_s_at Mla12DH_orf_3pri12 - - 6e-1 At4g23620 50S ribosomal protein-related S.X. H.G.
0.44 58.9 Contig12086_at Contig12086 - - 1e+0 At1g49640 hydrolase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.5 99.2 GSM146374 Golden Promise shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.3 99.0 GSM146376 Maythorpe shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.0 98.9 GSM146370 Golden Promise shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.9 98.7 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.8 98.6 GSM282034 Malting_steeped_Morex_rep1 GSE11200 Expression data from malting barley seeds
7.6 98.6 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.8 98.3 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
6.7 98.3 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
6.6 98.2 GSM146380 Maythorpe shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5 98.2 GSM282030 Malting_day4_Harrington_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 749 Contig1243_at Contig1243 - - 1e-1 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.60 5e-147 519 HU14M19u_s_at HU14M19u - - 3e+0 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.60 5e-147 519 HU14M19u_at HU14M19u - - 3e+0 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.34 3e-96 351 HV10E15u_at HV10E15u - - 8e-1 At3g22920 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative C.G. S.X.
0.49 1e-76 286 HA11M06u_s_at HA11M06u - - 1e+0 At2g27710 60S acidic ribosomal protein P2 (RPP2B) C.G. S.X.
0.49 1e-76 286 HA11M06u_at HA11M06u - - 1e+0 At2g27710 60S acidic ribosomal protein P2 (RPP2B) C.G. S.X.
0.13 5e-42 171 HZ49D19r_at HZ49D19r - - 1e+0 At1g20700 WOX14 (WUSCHEL RELATED HOMEOBOX 14) C.G. S.X.
0.02 5e-2 38 Contig7565_at Contig7565 - - 1e-2 At4g08300 nodulin MtN21 family protein C.G. S.X.
0.03 2e-1 36 HV09J08u_s_at HV09J08u - - 1e+1 At5g14700 cinnamoyl-CoA reductase-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 3e-8 59 Arabidopsis thaliana At1g74060 843746 60S ribosomal protein L6 (RPL6B) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, intracellular;MOFPA - - - C.G. S.X.
0.23 5e-20 99 Glycine max Gma.10826.4.S1_at AI442855 - - 5e-35 At1g74050 60S ribosomal protein L6 (RPL6C) C.G. S.X.
0.65 0 845 Oryza sativa Os02g0591700 AK072777.1 - Ribosomal protein L6 (Fragment) 9e-6 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.11 2e-3 44 Populus trichocarpa PtpAffx.5474.1.A1_at CV246512 hypothetical protein - 2e-1 At5g24890 unknown protein C.G. S.X.
0.59 0 1096 Triticum aestivum Ta.28704.1.S1_at BQ805465 - - 6e-2 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.14 1e-10 65 Vitis vinifera 1621076_at CF207338 hypothetical protein LOC100257150 - 6e-16 At1g74050 60S ribosomal protein L6 (RPL6C) C.G. S.X.
0.56 2e-137 488 Zea mays Zm.16290.1.S1_at AI677084 - - 2e-7 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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