Gene omics information

Query gene ID	Contig12483_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	Contig12483_at	Contig12483	-	-	2e-3	At3g57390	AGL18	S.X.	H.G.	Please select
0.61	78.7	Contig481_s_at	Contig481	-	-	6e-2	At1g80730	ZFP1 (ZINC-FINGER PROTEIN 1)	S.X.	H.G.	Please select
0.59	75.8	Contig4818_at	Contig4818	-	-	2e-14	At4g18810	binding / catalytic/ transcription repressor	S.X.	H.G.	Please select
0.57	74.9	HB25K10r_s_at	HB25K10r	-	-	3e+0	At2g33550	gt-2-related	S.X.	H.G.	Please select
0.47	62.2	Contig481_at	Contig481	-	-	6e-2	At1g80730	ZFP1 (ZINC-FINGER PROTEIN 1)	S.X.	H.G.	Please select
0.38	49.5	Contig14778_at	Contig14778	-	-	7e-10	At4g17640	CKB2	S.X.	H.G.	Please select
0.35	45.1	Contig21801_at	Contig21801	-	-	1e-1	At5g25490	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.33	42.6	Contig10444_at	Contig10444	-	-	6e-1	At5g42232	-	S.X.	H.G.	Please select
0.33	42.6	Contig24738_at	Contig24738	-	-	1e+0	At5g67110	ALC (ALCATRAZ)	S.X.	H.G.	Please select
0.32	40.3	HW03C10u_at	HW03C10u	-	-	3e+0	At4g32690	GLB3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.7	99.9	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
28.7	99.9	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
20.3	99.7	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
20.3	99.7	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
16.2	99.6	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
16.2	99.6	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
16.2	99.6	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
16.2	99.6	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
15.7	99.6	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
15.7	99.6	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	9e-72	270	Contig16350_at	Contig16350	-	-	9e-3	At3g57390	AGL18	C.G.	S.X.	Please select
0.10	6e-42	171	Contig2198_at	Contig2198	-	-	3e-6	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.12	1e-37	157	Contig2200_s_at	Contig2200	-	-	2e-3	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.10	1e-33	143	Contig11029_at	Contig11029	-	-	2e-10	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.11	1e-33	143	Contig10383_at	Contig10383	-	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.09	2e-32	139	Contig7416_at	Contig7416	-	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.11	2e-26	119	Contig11229_at	Contig11229	-	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.11	3e-22	105	Contig3831_at	Contig3831	-	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.08	7e-14	77	Contig4517_at	Contig4517	-	-	1e-7	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-3	44	Arabidopsis thaliana	At3g57390	824906	AGL18	encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	3e-6	54	Glycine max	GmaAffx.70788.1.S1_at	AI959798	-	-	8e-35	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.43	8e-131	468	Oryza sativa	Os03g0215400	L34271.1	-	Box protein (MADS box protein MADS1)	4e-2	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	7e-1	36	Populus trichocarpa	PtpAffx.207908.1.S1_at	pmrna15697	hypothetical protein	-	9e-36	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	684	Triticum aestivum	Ta.3854.1.S1_at	BJ251320	M7 protein	-	9e-3	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.11	4e-8	57	Vitis vinifera	1612606_at	AF373602.1	MADS-box protein 3	-	7e-31	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.44	1e-92	339	Zea mays	Zm.13250.1.S1_at	CN844210	Zea mays MADS14	-	3e-2	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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