Gene omics information

Query gene ID	Contig12434_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select
0.71	87.1	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	S.X.	H.G.	Please select
0.67	84.7	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.60	77.3	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig6826_s_at	Contig6826	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	S.X.	H.G.	Please select
0.43	56.4	Contig9200_at	Contig9200	-	-	6e-1	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.4	99.2	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
10.0	99.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
9.9	99.1	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
9.3	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.8	98.9	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
8.1	98.7	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
8.0	98.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.2	98.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7	98.3	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-2	40	rbags1n23_s_at	rbags1n23	-	-	3e+0	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig18367_at	Contig18367	-	-	2e+0	At2g15170	-	C.G.	S.X.	Please select
0.02	2e-1	36	Contig15811_at	Contig15811	-	-	8e+0	At5g50090	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig13901_at	Contig13901	-	-	4e-1	At1g10140	-	C.G.	S.X.	Please select
0.02	2e-1	36	Contig5838_at	Contig5838	-	-	1e-1	At5g34940	AtGUS3 (Arabidopsis thaliana glucuronidase 3)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig2756_at	Contig2756	-	-	9e-3	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig8794_s_at	Contig8794	-	-	2e-1	At5g63320	-	C.G.	S.X.	Please select
0.01	9e-1	34	Contig10422_at	Contig10422	-	-	2e+0	At3g01327	-	C.G.	S.X.	Please select
0.02	9e-1	34	Contig8108_at	Contig8108	-	-	3e-21	At4g26600	nucleolar protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-6	54	Arabidopsis thaliana	At4g30930	829217	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	Encodes a ribosomal RPL21M protein that is localized to the mitochondrion and is involved in karyogamy during female gametophyte development and fertilization. Mutants display defects in both male and female gametophyte development (i.e.collapsed pollen and female gametophytes with unfused central cells).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-11	71	Glycine max	Gma.7261.2.S1_at	BF595436	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	C.G.	S.X.	Please select
0.34	1e-70	268	Oryza sativa	Os05g0557800	AK068460.1	-	Ribosomal protein L21 family protein	7e-10	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	2e-1	38	Populus trichocarpa	PtpAffx.212871.1.S1_at	pmrna25191	hypothetical protein	-	1e-11	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	0	1215	Triticum aestivum	Ta.10989.1.S1_at	BQ802567	-	-	4e-5	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1613442_at	CF415231	hypothetical protein LOC100254900	-	6e-1	At3g60720	PDLP8 (PLASMODESMATA-LOCATED PROTEIN 8)	C.G.	S.X.	Please select
0.41	1e-110	398	Zea mays	Zm.9497.1.A1_at	CF243817	hypothetical protein LOC100194267	-	4e-11	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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