Gene omics information

Query gene ID Contig12402_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.1Contig12402_atContig12402--3e+0At3g05490RALFL22 (ralf-like 22)S.X.H.G.
0.7790.8HVSMEg0001N20r2_atHVSMEg0001N20r2--3e+0At4g03050AOP3S.X.H.G.
0.6784.7Contig2041_x_atContig2041--1e+0At3g61310DNA-binding family proteinS.X.H.G.
0.5674.3Contig2041_atContig2041--1e+0At3g61310DNA-binding family proteinS.X.H.G.
0.5066.9Contig5001_s_atContig5001--3e-1At5g09440EXL4 (EXORDIUM LIKE 4)S.X.H.G.
0.4661.0Contig8898_atContig8898--2e-29At2g25570bindingS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
26.299.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.199.6GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
15.799.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.099.2GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spike
11.099.2GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stress
10.799.2GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
9.399.0GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
8.798.9GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seeds
8.198.7GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
6.698.2GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.337e-104377HVSMEb0007K08r2_x_atHVSMEb0007K08r2--8e+0Atmg00210-C.G.S.X.
0.337e-104377HVSMEb0007K08r2_s_atHVSMEb0007K08r2--8e+0Atmg00210-C.G.S.X.
0.041e-1273Contig22907_atContig22907--4e+0At3g08910DNAJ heat shock protein, putativeC.G.S.X.
0.053e-446Contig15122_atContig15122--3e+0At3g58910F-box family proteinC.G.S.X.
0.023e-446Contig9483_atContig9483--7e-1At5g54900ATRBP45A (RNA-binding protein 45A)C.G.S.X.
0.018e-238Contig13966_atContig13966--4e-2At3g17900unknown proteinC.G.S.X.
0.018e-238Contig4878_atContig4878--8e-19At1g47260GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)C.G.S.X.
0.013e-136Contig322_atContig322--1e-5At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)C.G.S.X.
0.023e-136Contig4022_atContig4022--5e-4At5g16400ATF2C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e+034Arabidopsis thalianaAt3g05490819714RALFL22 (ralf-like 22)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.---C.G.S.X.
0.024e+034Glycine maxGmaAffx.66204.1.S1_atAW099390--2e-2At5g13070MSF1-like family proteinC.G.S.X.
0.093e-448Oryza sativaOs05g01724009633.m00717--2e+0At2g31560unknown proteinC.G.S.X.
0.029e-136Populus trichocarpaPtpAffx.214207.1.S1_atpmrna27647hypothetical protein-9e-1At5g11590TINY2 (TINY2)C.G.S.X.
0.111e-20101Triticum aestivumTaAffx.118620.1.S1_atBJ316617--1e+0At2g31560unknown proteinC.G.S.X.
0.022e-136Vitis vinifera1620317_atCF205562.1--8e-8At5g11070unknown proteinC.G.S.X.
0.024e+032Zea maysZm.16283.1.A1_s_atAI637233hypothetical protein LOC100279905-3e+0At5g64880unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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