Gene omics information

Query gene ID	Contig12398_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig12398_at	Contig12398	-	-	2e-1	At2g31240	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please select
0.50	66.9	Contig7129_at	Contig7129	-	-	5e+0	At5g01750	unknown protein	S.X.	H.G.	Please select
0.46	61.0	HB20G11r_s_at	HB20G11r	-	-	3e+0	At3g03626	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig10945_at	Contig10945	-	-	3e+0	At5g24110	WRKY30	S.X.	H.G.	Please select
0.36	47.1	Contig725_s_at	Contig725	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	S.X.	H.G.	Please select
0.33	42.6	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	97.4	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
4.0	96.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
3.4	94.8	GSM372976	genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM372989	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2480	Contig12398_s_at	Contig12398	-	-	2e-1	At2g31240	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8588_at	Contig8588	-	-	1e-2	At2g35880	-	C.G.	S.X.	Please select
0.02	1e+0	34	Contig23520_at	Contig23520	-	-	3e-14	At1g35510	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig11680_at	Contig11680	-	-	2e-3	At1g74660	MIF1 (MINI ZINC FINGER 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig10514_at	Contig10514	-	-	1e-2	At5g67360	ARA12	C.G.	S.X.	Please select
0.02	1e+0	34	Contig8373_at	Contig8373	-	-	5e-1	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig6368_s_at	Contig6368	-	-	3e-1	At3g09250	DNA binding / nuclease	C.G.	S.X.	Please select
0.01	5e+0	32	Contig5731_at	Contig5731	-	-	5e-4	At5g22950	VPS24.1	C.G.	S.X.	Please select
0.02	5e+0	32	Contig25153_at	Contig25153	-	-	3e-1	At3g23245	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	38	Arabidopsis thaliana	At2g31240	817681	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	34	Glycine max	PsAffx.psZS008xI20f_at	PsAffx.psZS008xI20f	-	-	3e-1	At4g28280	unknown protein	C.G.	S.X.	Please select
0.41	2e-128	460	Oryza sativa	Os.49090.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-3	44	Populus trichocarpa	PtpAffx.205754.1.S1_at	pmrna11360	hypothetical protein	-	4e-27	At2g31240	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	0	1277	Triticum aestivum	TaAffx.36688.1.S1_at	BJ319557	-	-	2e+0	At3g12820	AtMYB10 (myb domain protein 10)	C.G.	S.X.	Please select
0.06	1e-2	40	Vitis vinifera	1620382_at	CF516951	hypothetical protein LOC100247992	-	3e-30	At2g31240	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.43	5e-92	337	Zea mays	Zm.13699.1.A1_at	CD446740	-	-	2e+0	At5g46610	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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