Gene omics information

Query gene ID Contig12389_s_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7489.1Contig12389_s_atContig12389--1e-2At1g77980AGL66 (AGAMOUS-LIKE 66)S.X.H.G.
0.3747.9Contig26233_atContig26233--1e+0At5g56920-S.X.H.G.
0.3747.9Contig9457_atContig9457--2e-3At5g66070zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.3545.1Contig14682_atContig14682--2e+0At4g1739060S ribosomal protein L15 (RPL15B)S.X.H.G.
0.3342.6Contig8893_atContig8893--2e-14At5g61970signal recognition particle-related / SRP-relatedS.X.H.G.
0.3342.6Contig16196_atContig16196--2e-2At4g20470unknown proteinS.X.H.G.
0.3138.6Contig13237_atContig13237--1e-11At3g56430-S.X.H.G.
0.2835.5rbah28f02_s_atrbah28f02--2e+0At3g03010aminoacyl-tRNA hydrolaseS.X.H.G.
0.2732.1Contig7192_atContig7192--2e-8At4g38600KAK (KAKTUS)S.X.H.G.
0.2630.4Contig12105_atContig12105--2e-2At3g52640nicastrin-relatedS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
16.399.6GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barley
15.399.6GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
12.099.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barley
12.099.3GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barley
11.899.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
10.599.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
9.799.0GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seeds
7.898.6GSM1611487% SWC rep3GSE6990Barley drought stress
6.998.3GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
6.598.2GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.780848Contig12388_atContig12388--2e-2At1g77980AGL66 (AGAMOUS-LIKE 66)C.G.S.X.
0.031e-136HVSMEg0006G02r2_s_atHVSMEg0006G02r2--1e+0At1g10800unknown proteinC.G.S.X.
0.041e-136Contig18410_s_atContig18410--3e+0At4g09649unknown proteinC.G.S.X.
0.024e-134Contig10793_atContig10793--6e-17At3g54460SNF2 domain-containing protein / helicase domain-containing protein / F-box family proteinC.G.S.X.
0.034e-134Contig14957_atContig14957--4e-7At1g21640NADK2C.G.S.X.
0.022e+032Contig9099_atContig9099--3e-3At4g26080ABI1 (ABA INSENSITIVE 1)C.G.S.X.
0.022e+032Contig8413_s_atContig8413--6e-1At4g02733-C.G.S.X.
0.032e+032EBro03_SQ005_J03_atEBro03_SQ005_J03--4e+0At5g39470F-box family proteinC.G.S.X.
0.032e+032Contig9470_atContig9470--6e+0At4g29980unknown proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-240Arabidopsis thalianaAt1g77980844133AGL66 (AGAMOUS-LIKE 66)Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL66 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.---C.G.S.X.
0.041e+034Glycine maxPsAffx.C117000029_atPsAffx.C117000029--5e+0At4g03180unknown proteinC.G.S.X.
0.052e+034Oryza sativaOsAffx.1512.1.S1_at---0C.G.S.X.
0.031e+034Populus trichocarpaPtpAffx.62483.1.A1_atCV278273--9e-2At1g70700TIFY7C.G.S.X.
0.389e-72270Triticum aestivumTa.6709.1.S1_atCD874907--4e-2At4g18380F-box family proteinC.G.S.X.
0.034e+030Vitis vinifera1619524_atCF517397--6e-2At5g13240transcription regulatorC.G.S.X.
0.051e-446Zea maysZm.18122.1.S1_atCN844577hypothetical protein LOC100278956-5e+0At5g44540tapetum-specific protein-relatedC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage